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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAB05117; SV 2; linear; genomic DNA; STD; INV; 1851 BP.
XX
PA   Z82256.1
XX
DE   Caenorhabditis elegans C. elegans protein B0513.5, confirmed by transcript
DE   evidence
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
OX   NCBI_TaxID=6239;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1851
FT                   /organism="Caenorhabditis elegans"
FT                   /chromosome="IV"
FT                   /strain="Bristol N2"
FT                   /mol_type="genomic DNA"
FT                   /clone="B0513"
FT   CDS             complement(join(Z82256.1:18399..18611,
FT                   Z82256.1:19636..19836,Z82256.1:19964..20168,
FT                   Z82256.1:20467..20807,Z82256.1:21444..21699,
FT                   Z82256.1:22537..22640,Z82256.1:23569..23892,
FT                   Z82256.1:24336..24487,Z82256.1:26162..26216))
FT                   /locus_tag="B0513.5"
FT                   /standard_name="B0513.5"
FT                   /product="C. elegans protein B0513.5, confirmed by
FT                   transcript evidence"
FT                   /note="contains similarity to Pfam domain PF01619 Proline
FT                   dehydrogenase contains similarity to Interpro domains
FT                   IPR011992 (EF-Hand type), IPR002872 (Proline
FT                   dehydrogenase), IPR015659 (Proline oxidase)"
FT                   /db_xref="GOA:O45228"
FT                   /db_xref="InterPro:IPR011992"
FT                   /db_xref="UniProtKB/Swiss-Prot:O45228"
FT                   /db_xref="WormBase:WBGene00007197"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="CAB05117.2"
FT                   /translation="MQAALIGLNFPLQRRFLSGVLTTTSSAKRCYSGDTGKPYDCTSAE
FT                   HKKELEECYNRLDLSFENTKEAFKSKSNTELVRALVVLRLCGIQTLVNQNQIILNTMRR
FT                   VLGKNLFKKTLKNTFFGHFVAGETEEEVRHVVEKLRNYGVKSILDYSVEADITSQEATD
FT                   KTVKGTSVATVKPAAMTPVVDAKTLETTRERYTVHEEFGDRRQGVSSARTYFYEGEEQC
FT                   DKNRDIFKDSINAVASATKNEGFVAVKITALGRPQLLLKLSEAIVQTQNFFKALTGGMS
FT                   LQEGRLTSQEFYKRLGELGVKTDTESVKKFFDEVDFDSDGIVDLHGWNHILDDHVKLGQ
FT                   LFQVLNIKTGSLEPLIQNLSNEEEQEFRNMVRRTLDVAEYAIEKGVRIMVDAEQTYLQP
FT                   AISKITIEMMKKYNKGRGNIFNTYQAYLKGTLQNMEADMQVARREGWHFGAKLVRGAYM
FT                   EQERARAKAIGYEDPINDNFEATSKMYESCLTRIADEVHRRGKTNVSVMVASHNEDTVR
FT                   FALNLMKEKCISPSERVMCMAQLYGMCDQVSFSLGQAGFSVYKYLPYGPVEEVLPYLSR
FT                   RALENGSVLKKANKERDLLWKELKRRISSGEFKARSSSSS"
XX
SQ   Sequence 1851 BP; 610 A; 323 C; 440 G; 478 T; 0 other; 2905507693 CRC32;
     atgcaagcag ctttgatagg actcaacttt ccattgcaaa gacgcttttt gtcaggtgtc        60
     ctaaccacaa caagttccgc caaaagatgt tattccggtg atacggggaa accatacgat       120
     tgtacatctg ctgaacacaa gaaagaactg gaagaatgtt ataatcgatt ggatttatct       180
     tttgaaaata caaaagaggc atttaagagc aaatcaaaca ccgagctcgt gcgtgctctt       240
     gtcgttcttc gattatgcgg aattcaaact cttgtcaatc aaaatcaaat aattcttaat       300
     acaatgcgtc gtgttttggg aaagaatctg ttcaagaaaa cactgaaaaa tacatttttc       360
     ggacattttg tggctggtga aactgaagaa gaagtacgtc atgttgtgga gaaacttcga       420
     aattatggag tcaaatcgat tttggattat tcagttgaag cagatattac gagtcaagaa       480
     gcaactgata agacggtcaa aggaacgtct gtagcgacgg ttaagccagc ggcgatgaca       540
     ccagttgtgg atgcaaaaac gctcgaaacg acaagggaac ggtacactgt acatgaagag       600
     tttggagatc ggcggcaggg tgtttctagt gcaagaacat atttctacga aggagaagag       660
     caatgtgaca agaatcgtga tattttcaag gattccataa acgctgttgc atcggctact       720
     aaaaacgaag gatttgttgc tgtaaagatt acagctctcg gtagacctca actacttttg       780
     aaactttctg aagctattgt acagactcag aactttttca aagcgttgac cggtggaatg       840
     agtcttcagg agggaagatt gacgtcacag gagttttata aaagacttgg agaacttggc       900
     gtcaaaaccg acacagaatc cgtcaagaaa ttcttcgacg aagtcgattt tgattcggat       960
     ggaattgttg atttacacgg atggaatcac attttggatg atcacgtgaa actgggacaa      1020
     ttgtttcaag tactgaacat caagaccgga tcacttgagc cattgattca gaatttgtca      1080
     aacgaagaag aacaagaatt caggaatatg gtacgaagaa ctcttgacgt ggcagaatac      1140
     gctattgaga agggagtcag aattatggtg gacgccgagc agacttactt acagccagcg      1200
     atctcaaaga ttacaattga aatgatgaaa aaatacaata agggacgtgg aaacatcttc      1260
     aacacctacc aagcatactt gaagggaacc cttcaaaata tggaggctga tatgcaagtt      1320
     gccagacgtg aaggatggca tttcggtgca aaacttgttc gtggagcata catggagcag      1380
     gagagagcac gagcaaaagc aattggttat gaggatccga ttaatgataa ttttgaggcc      1440
     acctcaaaaa tgtacgagtc atgtctgaca cgtatcgccg atgaagtaca tcgtcgtggt      1500
     aagaccaatg tgtccgtaat ggtggcaagt cacaatgagg atacagtaag attcgcattg      1560
     aatttgatga aggaaaagtg tatttcacca tcggaacgtg ttatgtgcat ggcacagttg      1620
     tacggaatgt gtgatcaggt atcattctcc ctgggtcaag ccggtttctc agtctacaaa      1680
     tatcttccat atggaccagt tgaagaagtt ctaccatatc taagtcgacg tgcacttgaa      1740
     aatggaagtg tattgaaaaa agcgaataag gaacgtgatc tcttgtggaa agagcttaaa      1800
     cgacgaatct caagtggtga atttaaagcc agaagtagca gttcttctta a               1851
//
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