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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAB04603; SV 1; linear; genomic DNA; STD; INV; 1056 BP.
XX
PA   Z81570.1
XX
DE   Caenorhabditis elegans C. elegans protein K12G11.4, partially confirmed by
DE   transcript evidence
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
OX   NCBI_TaxID=6239;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1056
FT                   /organism="Caenorhabditis elegans"
FT                   /chromosome="V"
FT                   /strain="Bristol N2"
FT                   /mol_type="genomic DNA"
FT                   /clone="K12G11"
FT   CDS             complement(join(Z81570.1:20117..20338,
FT                   Z81570.1:20642..21190,Z81570.1:21300..21584))
FT                   /gene="sodh-2"
FT                   /locus_tag="K12G11.4"
FT                   /standard_name="K12G11.4"
FT                   /product="C. elegans protein K12G11.4, partially confirmed
FT                   by transcript evidence"
FT                   /note="C. elegans SODH-2 protein; contains similarity to
FT                   Pfam domains PF00107 (Zinc-binding dehydrogenase) , PF08240
FT                   (Alcohol dehydrogenase GroES-like domain) contains
FT                   similarity to Interpro domains IPR013149 (Alcohol
FT                   dehydrogenase, zinc-binding), IPR013154 (Alcohol
FT                   dehydrogenase GroES-like), IPR002085 (Alcohol dehydrogenase
FT                   superfamily, zinc-containing), IPR016040 (NAD(P)-binding
FT                   domain), IPR002328 (Alcohol dehydrogenase, zinc-containing,
FT                   conserved site)"
FT                   /db_xref="GOA:O45687"
FT                   /db_xref="InterPro:IPR002085"
FT                   /db_xref="InterPro:IPR002328"
FT                   /db_xref="InterPro:IPR011032"
FT                   /db_xref="InterPro:IPR013149"
FT                   /db_xref="InterPro:IPR013154"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/Swiss-Prot:O45687"
FT                   /db_xref="WormBase:WBGene00010791"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="CAB04603.1"
FT                   /translation="MSSANIPATQSALIFEKYGGPLEVRQVSVPQPQENELLVKIEYSG
FT                   ICHSDLHTWEGDFEYASICPLIGGHEGAGTVVTIGSKVKGWNIGDRAGIKLINANCLNC
FT                   EYCKTGHEPLCDHIQNYGIDRHGTFQEYLTIRDIDAIKVSNDTNLAAAAPVLCGGVTAY
FT                   KSLKATNVKPGQIVVLTGAGGGLGSFGIQYAKAMGMRVVAVDHISKEDHCRNLGAEWFV
FT                   DAFDTPDIVAHIRKLTNGGAHGVVSFAAAKKPMEYALEYVRKRGTVVFVGLPKDGTIPL
FT                   DTLSLICNEITVKGSIVGSRMDVDEAIDFITRGIVHVPIELVKLEDVPSVYQRMKDGKV
FT                   TSRVVVDFSMR"
XX
SQ   Sequence 1056 BP; 331 A; 180 C; 242 G; 303 T; 0 other; 3482522534 CRC32;
     atgtcatcag ctaatattcc tgccacgcaa agtgctttaa tatttgaaaa atatggagga        60
     cctctcgaag ttcgacaagt ttcagttcca caaccgcaag aaaatgaact tttagtgaaa       120
     atcgaatatt ctggaatttg ccattctgat cttcatacgt gggaaggtga ttttgaatat       180
     gcttccattt gtcctttaat tggagggcat gaaggtgctg gaactgttgt gactattggc       240
     tcaaaagtta aaggatggaa cattggtgat cgagcaggaa tcaagcttat caacgcaaat       300
     tgcctaaatt gtgaatactg taaaacagga cacgaaccgc tttgtgatca tatccaaaac       360
     tacggaatag accgccatgg aacctttcaa gaatatctaa ctattcggga tattgatgcc       420
     attaaagttt cgaatgacac aaatctcgca gcagctgctc cagtattatg tggtggagta       480
     actgcatata aatccctgaa agcaacaaat gtgaaaccag gccaaatagt tgtactaacg       540
     ggtgctggag gaggattagg atcttttgga attcaatacg caaaagcaat gggaatgaga       600
     gttgttgctg ttgatcatat tagcaaagaa gatcactgca gaaatcttgg agctgaatgg       660
     ttcgtcgatg cttttgatac cccagacatt gtggctcata ttcgaaaatt aacgaatgga       720
     ggagcacatg gtgttgttag ttttgcagca gccaaaaagc caatggaata tgctttggaa       780
     tatgtcagaa aaagagggac cgtggtgttt gttggtcttc caaaagatgg aacgattccc       840
     cttgatacac tttcactaat ttgcaatgaa ataactgtga agggatcaat tgttggatca       900
     cgcatggatg ttgatgaagc aatcgatttt attactcgtg gaattgtgca tgttccaata       960
     gaacttgtaa aactcgaaga tgttccaagt gtctatcaac gaatgaaaga cgggaaggtc      1020
     acttctcgtg ttgttgtcga tttttcaatg cgatga                                1056
//
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