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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAB03876; SV 1; linear; genomic DNA; STD; INV; 1470 BP.
XX
PA   Z81468.1
XX
DE   Caenorhabditis elegans C. elegans protein C13B4.2, confirmed by transcript
DE   evidence
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
OX   NCBI_TaxID=6239;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1470
FT                   /organism="Caenorhabditis elegans"
FT                   /chromosome="II"
FT                   /strain="Bristol N2"
FT                   /mol_type="genomic DNA"
FT                   /clone="C13B4"
FT   CDS             complement(join(Z81468.1:21450..21734,
FT                   Z81468.1:22690..23349,Z81468.1:23725..24037,
FT                   Z81468.1:24084..24187,Z83236.1:105..212))
FT                   /gene="usp-14"
FT                   /locus_tag="C13B4.2"
FT                   /standard_name="C13B4.2"
FT                   /product="C. elegans protein C13B4.2, confirmed by
FT                   transcript evidence"
FT                   /note="C. elegans USP-14 protein; contains similarity to
FT                   Pfam domain PF00443 Ubiquitin carboxyl-terminal hydrolase
FT                   contains similarity to Interpro domains IPR001394
FT                   (Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2),
FT                   IPR018200 (Peptidase C19, ubiquitin carboxyl-terminal
FT                   hydrolase 2, conserved site), IPR000626 (Ubiquitin)"
FT                   /db_xref="GOA:Q17361"
FT                   /db_xref="HSSP:1NBF"
FT                   /db_xref="InterPro:IPR000626"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q17361"
FT                   /db_xref="WormBase:WBGene00006856"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="CAB03876.1"
FT                   /translation="MPIVNVKWQKEKYVVEVDTSAPPMVFKAQLFALTQVVPERQKVVI
FT                   MGRTLGDDDWEGITIKENMTIMMMGSVGEIPKPPTVLEKKQANRDKQAEEISALYPCGL
FT                   ANLGNTCYFNSCVQMLKEVNELVLKPAEEMRIREHNDRLCHNLATLFNSLRDKDRALRS
FT                   KGEPIKPFAAILTLSDSFPQFEKFKQQDANECLVSIMSNVTRIYGLSGWNIESLFRIQT
FT                   ETTMKCLESDEVSEKKVERNNQLTCYVNQDVRFLQTGIKAGFEEEMTRNSEELNRDAKW
FT                   QKNTQISRLPKYLTVNINRFFYKESTKTNAKILKSVQFPMQLDTYDLCSQELKDKLVAR
FT                   RADIKLEEDAKLERELRKKVLDKEQGDKIFDDGVALPTAFEDDAGSNNSGFYDLKGIIT
FT                   HKGRSSQDGHYVAWMRSSEDGKWRLFDDEHVTVVDEEAILKTSGGGDWHSAYVLLYEAR
FT                   VIKQFPELPPAPVPTEVAADTAEPMEVSEKQ"
XX
SQ   Sequence 1470 BP; 446 A; 310 C; 365 G; 349 T; 0 other; 2590128253 CRC32;
     atgcctattg tcaatgttaa atggcaaaag gagaaatatg ttgtggaagt cgacacctca        60
     gcacctccga tggtgttcaa agcgcaactt ttcgctttaa cacaggtggt acctgaacgg       120
     cagaaggtag tgattatggg acgcacactg ggcgatgatg actgggaagg aatcactatc       180
     aaggagaata tgacgattat gatgatggga tctgttggtg aaattccgaa gcctcccact       240
     gtgctcgaaa agaaacaagc aaaccgggat aaacaagccg aagagatttc agcgctctat       300
     ccatgtgggc tcgctaatct cggaaacacg tgttatttca actcgtgtgt gcaaatgctc       360
     aaagaagtca acgagctggt tctgaagcct gccgaggaga tgagaatccg tgagcataat       420
     gatcgtctgt gccataatct tgctacactc ttcaatagtc ttcgcgataa ggatagagct       480
     cttcgcagca agggagagcc gatcaagccg ttcgcagcga ttcttactct ctccgacagt       540
     tttcctcaat tcgaaaagtt caaacaacag gatgccaacg aatgtctcgt atcgatcatg       600
     agcaacgtca cgagaattta tggattgtcc gggtggaata ttgaatcact tttccgaatc       660
     cagacagaga ccacgatgaa gtgtctggaa agtgacgaag tttctgagaa aaaagtggag       720
     cggaacaatc agttgacttg ctatgtgaat caagacgttc gatttttgca aactggaatt       780
     aaagctggat ttgaagagga aatgacgaga aatagtgaag aacttaatag agatgcgaaa       840
     tggcagaaaa atactcaaat ctcgcgtctt ccaaaatacc tcactgtgaa tatcaatcga       900
     ttcttctaca aggaaagcac caagaccaac gcgaaaattc tgaaatccgt ccaattcccc       960
     atgcaattag acacctatga cttgtgcagt caggaactca aggataaact tgttgctcga      1020
     cgagctgata tcaaattgga ggaggatgcg aagctggagc gagagctgag gaagaaggtg      1080
     ttggacaaag agcaaggcga taagattttc gatgatggag ttgctctgcc taccgctttc      1140
     gaagatgatg caggatcgaa caactctgga ttttatgatc tcaagggaat catcacccac      1200
     aaaggccgat cctctcaaga tggtcactac gtcgcctgga tgcgatcatc tgaagacggc      1260
     aagtggcgtc tttttgacga tgagcatgtc actgttgtcg acgaggaagc cattctgaaa      1320
     acgtctggag gtggtgattg gcacagtgcc tacgttcttc tctacgaggc ccgtgtcatc      1380
     aagcaattcc ctgaacttcc accagcacca gtaccgactg aagttgccgc tgatactgct      1440
     gagccaatgg aagtatcgga gaagcaataa                                       1470
//
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