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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAB03422; SV 2; linear; genomic DNA; STD; INV; 1827 BP.
XX
PA   Z81131.2
XX
DE   Caenorhabditis elegans C. elegans protein T24D1.1a, confirmed by transcript
DE   evidence
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
OX   NCBI_TaxID=6239;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1827
FT                   /organism="Caenorhabditis elegans"
FT                   /chromosome="I"
FT                   /strain="Bristol N2"
FT                   /mol_type="genomic DNA"
FT                   /clone="T24D1"
FT   CDS             join(Z81131.2:6117..6424,Z81131.2:6865..7348,
FT                   Z81131.2:7597..8024,Z81131.2:8225..8570,
FT                   Z81131.2:8621..8698,Z81131.2:9212..9394)
FT                   /gene="sqv-5"
FT                   /locus_tag="T24D1.1a"
FT                   /standard_name="T24D1.1a"
FT                   /product="C. elegans protein T24D1.1a, confirmed by
FT                   transcript evidence"
FT                   /note="C. elegans SQV-5 protein; contains similarity to
FT                   Pfam domain PF05679 Chondroitin
FT                   N-acetylgalactosaminyltransferase contains similarity to
FT                   Interpro domain IPR008428 (Chondroitin
FT                   N-acetylgalactosaminyltransferase)"
FT                   /db_xref="GOA:O02330"
FT                   /db_xref="InterPro:IPR008428"
FT                   /db_xref="UniProtKB/TrEMBL:O02330"
FT                   /db_xref="WormBase:WBGene00005023"
FT                   /protein_id="CAB03422.2"
FT                   /translation="MPLIRLKGVDDTYPPQKKSFAMVKWLAENMADEYDWFLRADDDLY
FT                   IRGEELALFLRSVDSSKAHIIGQAGLGNSAEYGLLALGSTDNYCMGGPGIVMSRDTLLK
FT                   VSPHLESCLQHMLTSHEDVELGRCIRKHVGVACTWNYEMQKLFHNNQSAIKESYAKNMK
FT                   ELKDAITLHPIKDPAVMRKVHLRNREIKLREARAKRSLLSSELSTAKAQTLVRMTPNRT
FT                   NDLTPWEYINNNKILFCADRVNCPRHTVDLSIRTEMADTITQLFDEFNTNARQRGRVLQ
FT                   FQSLQYGYMRVEPTKGVDYVLDMLLWFKKFRPPNRTTISVRRHAYVQQTFGKLRSLSEG
FT                   VFRSNMRANSTLIEDPTLHMIMPLRGRAAIFARFAQHLKSICARGGDDLAVSLTIVLYS
FT                   SEDEMENRETIEMLRASFIPVTVIEMGDVSFSRGVALMRGAETLPANALLFFTDVDMLF
FT                   TCDALKRIKSNTILNAQIYFPIVFSEFSHESWSENDKLLADAFHYGRGRGYFRHFGYGL
FT                   AAMYKADLMDVGGFDTKIEGWGKEDVDLFEKAIKNGRLRVIRVPEPGLVHIYHPIHCDE
FT                   NMPTAQKDMCHGSKAASLASIDTLVEQIAQYT"
XX
SQ   Sequence 1827 BP; 563 A; 343 C; 406 G; 515 T; 0 other; 577553663 CRC32;
     atgccattaa ttcgtctgaa aggagttgat gatacttatc caccacagaa gaaaagtttc        60
     gcaatggtaa aatggttggc agagaatatg gctgatgaat atgattggtt cttgcgagca       120
     gacgacgacc tctacattag aggagaagag ctcgctttat tcctaagatc tgtcgattca       180
     tccaaagctc atatcatcgg acaggctgga cttggtaaca gtgcggaata tggtcttcta       240
     gctcttggat ctaccgataa ttattgtatg ggaggacctg gaattgttat gagcagggac       300
     accttattaa aagtatctcc tcatctcgaa tcatgcctcc aacacatgct gacttctcac       360
     gaggacgtcg aactcgggcg gtgtattcga aaacatgtcg gtgtagcttg cacgtggaat       420
     tatgaaatgc aaaagttgtt ccataataat caaagtgcaa tcaaggagtc atatgcaaaa       480
     aatatgaaag aattgaaaga tgcaattact cttcatccga ttaaagatcc agctgtaatg       540
     aggaaggttc atcttcgaaa tcgagaaatt aaacttcgtg aagcacgagc taaacgaagt       600
     cttttgagtt cggagctcag tactgcaaaa gcacagacat tggtacgaat gacaccgaat       660
     agaacgaatg atttgacacc atgggaatat attaataaca ataaaattct gttttgtgcg       720
     gatcgggtca attgtcctcg gcatactgta gatttgagta ttcggacgga aatggccgac       780
     actatcacac agttattcga cgagttcaac acaaatgctc gccaaagagg tcgtgttctt       840
     caatttcaaa gtcttcaata tggatacatg cgtgttgaac ctacaaaagg agtcgattat       900
     gttcttgaca tgttactttg gttcaaaaag ttccgtccac caaacagaac aacaatttcc       960
     gttcgaagac acgcgtatgt tcaacaaaca ttcggaaaac ttcgaagtct ctctgaagga      1020
     gtgttccgat caaatatgag agcaaactct acacttattg aagatccaac attgcatatg      1080
     attatgccat taagaggaag agctgccata tttgcaagat ttgctcaaca tttgaagagt      1140
     atttgtgcga gaggaggaga tgatttagct gtttcattga caattgtatt atactcgagt      1200
     gaagatgaaa tggagaatag agaaacgatt gaaatgctcc gtgcaagctt catcccagta      1260
     acagtaatcg aaatgggtga tgtttcattc tcacgtggtg ttgctcttat gcgtggagct      1320
     gaaactcttc cagccaatgc tcttctattc tttactgatg ttgatatgct attcacatgt      1380
     gatgcattga aacgtataaa atcgaataca attctcaacg cacaaatcta cttcccgatc      1440
     gttttttctg aattctcaca tgagagttgg tctgaaaatg acaagttatt ggctgacgcc      1500
     ttccattatg gacgtggacg tggatatttt agacattttg gttatggtct cgcagcgatg      1560
     tacaaggcgg atttgatgga tgtcggaggg tttgacacaa agatcgaagg atggggaaag      1620
     gaagatgttg acttgtttga gaaggcaatc aaaaacggtc gtctccgagt gattcgagtc      1680
     cctgaacctg gacttgttca catctatcac ccaattcatt gcgatgaaaa tatgccaact      1740
     gctcaaaagg atatgtgcca tggttcaaaa gcagcaagtc ttgcttcaat tgatacactt      1800
     gtcgagcaga ttgcccagta cacatga                                          1827
//
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