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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAB01957; SV 1; linear; mRNA; STD; HUM; 2013 BP.
XX
PA   Z79693.1
XX
DE   Homo sapiens (human) protein-tyrosine phosphatase NC-PTPCOM1
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
OX   NCBI_TaxID=9606;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2013
FT                   /organism="Homo sapiens"
FT                   /mol_type="mRNA"
FT                   /dev_stage="adult"
FT                   /cell_line="SK-N-SH"
FT                   /cell_type="neuroblastoma cells"
FT                   /tissue_type="tumor"
FT   CDS             Z79693.1:86..2098
FT                   /product="protein-tyrosine phosphatase NC-PTPCOM1"
FT                   /db_xref="GDB:9835737"
FT                   /db_xref="GOA:Q15256"
FT                   /db_xref="HGNC:9680"
FT                   /db_xref="InterPro:IPR016334"
FT                   /db_xref="PDB:2A8B"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q15256"
FT                   /func_characterised="similar sequence"
FT                   /protein_id="CAB01957.1"
FT                   /translation="MRRAVCFPALCLLLNLHAAGCFSGNNDHFLAINQKKSGKPVFIYK
FT                   HSQDIEKSLDIAPQKIYRHSYHSSSEAQVSKRHQIVNSAFPRPAYDPSLNLLAMDGQDL
FT                   EVENLPIPAANVIVVTLQMDVNKLNITLLRIFRQGVAAALGLLPQQVHINRLIGKKNSI
FT                   ELFVSPINRKTGISDALPSEEVLRSLNINVLHQSLSQFGITEVSPEKNVLQGQHEADKI
FT                   WSKEGFYAVVIFLSIFVIIVTCLMILYRLKERFQLSLRQDKEKNQEIHLSPITLQPALS
FT                   EAKTVHSMVQPEQAPKVLNVVVDPQGRGAPEIRATTATSVCPSPFKMKPIGLQERRGSN
FT                   VSLTLDMSSLGNIEPFVSIPTPREKVAMEYLQSASRILTRSQLRDVVASSHLLQSEFME
FT                   IPMNFVDPKEIDIPRHGTKNRYKTILPNPLSRVCLRPKNVTDSLSTYINANYIRGYSGK
FT                   EKAFIATQGPMINTVDDFWQMVWQEDSPVIVMITKLKEKNEKCVLYWPEKRGIYGKVEV
FT                   LVISVNECDNYTIRNLVLKQGSHTQHVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRL
FT                   ASQGRGPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRMDRGGMVQTSE
FT                   QYEFVHHALCLYESRLQQRLSSESLKTCQTINLLG"
XX
SQ   Sequence 2013 BP; 602 A; 451 C; 456 G; 504 T; 0 other; 2480033510 CRC32;
     atgcggagag cagtctgctt ccctgcgctg tgcctgctcc ttaatcttca cgctgcaggg        60
     tgcttttcag gaaacaatga tcattttttg gcaattaatc agaagaagag tgggaagccg       120
     gtattcattt ataagcattc acaagacatt gagaagagcc tggatatagc cccacaaaaa       180
     atctacagac atagctacca ttcctcttcc gaagctcaag taagcaaacg ccaccagatt       240
     gtcaattcag catttcctag acccgcatat gacccgtctc tcaatctgct ggccatggat       300
     ggtcaagatc ttgaagtgga aaatctccca atcccagcag caaatgtaat tgtggtgaca       360
     ctgcaaatgg atgtaaacaa gctgaacata accttgcttc ggatcttccg ccaaggagtg       420
     gctgcagctt taggactctt accccagcaa gtgcacatca atcgcctcat tggaaagaag       480
     aacagtattg aactgtttgt gtctcccata aaccgaaaaa caggaatttc tgatgctctg       540
     ccctctgagg aagttcttcg ttcacttaat atcaatgttt tgcatcaaag tttatcccag       600
     tttggaatta cagaagtctc tcctgagaaa aatgttttac aagggcagca tgaagcggac       660
     aaaatctgga gcaaagaagg attttatgct gttgtcattt ttctcagcat ctttgttatt       720
     atagtaacgt gtttgatgat tctttacaga ttaaaagaaa gatttcagct ttccttaaga       780
     caagacaaag agaaaaacca ggagatccac ctatcgccca tcacattaca gccagcactg       840
     tccgaggcaa agacagtcca cagcatggtc caacctgagc aggccccaaa ggtactgaat       900
     gttgtcgtgg accctcaagg ccgaggtgct cctgagatca gagctaccac cgctacctct       960
     gtttgccctt ctcctttcaa aatgaagccc ataggacttc aagagagaag agggtccaac      1020
     gtatctctta cattggacat gagtagcttg gggaacattg aaccctttgt gtctatacca      1080
     acaccacggg agaaggtagc aatggagtat ctgcagtcag ccagccgaat tctcacaagg      1140
     tctcagctga gggacgtcgt ggcaagttca catttactcc aaagtgaatt catggaaata      1200
     ccaatgaact ttgtggatcc caaagaaatt gatattccgc gtcatggaac taaaaatcgc      1260
     tataagacca ttttaccaaa tcccctcagc agagtgtgtt taagaccaaa aaatgtaacc      1320
     gattcattga gcacctacat taatgctaat tatattaggg gctacagtgg caaggagaaa      1380
     gccttcattg ccacgcaggg ccccatgatc aacaccgtgg atgatttctg gcagatggtt      1440
     tggcaggaag acagccctgt gattgttatg atcacaaaac tcaaagaaaa aaatgagaaa      1500
     tgtgtgctat actggccgga aaagagaggg atatatggaa aagttgaggt tctggttatc      1560
     agtgtaaatg aatgtgataa ctacaccatt cgaaaccttg tcttaaagca aggaagccac      1620
     acccaacatg tgaagcatta ctggtacacc tcatggcctg atcacaagac tccagacagt      1680
     gcccagcccc tcctacagct catgctggat gtagaagaag acagacttgc ttcccagggc      1740
     cgagggcctg tggttgtcca ctgcagtgca ggaataggta gaacagggtg ttttattgct      1800
     acatccattg gctgtcaaca gctgaaagaa gaaggagttg tggatgcact aagcattgtc      1860
     tgccagcttc gtatggatag aggtggaatg gtgcaaacca gtgagcagta tgaatttgtg      1920
     caccatgctc tgtgcctgta tgagagcaga cttcagcaga gactgtccag tgagtcattg      1980
     aagacttgtc agaccatcaa tctcttgggg tga                                   2013
//
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