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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAA95808; SV 1; linear; genomic DNA; STD; INV; 1638 BP.
XX
PA   Z71262.1
XX
DE   Caenorhabditis elegans C. elegans protein F22D6.3a, confirmed by transcript
DE   evidence
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
OX   NCBI_TaxID=6239;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1638
FT                   /organism="Caenorhabditis elegans"
FT                   /chromosome="I"
FT                   /strain="Bristol N2"
FT                   /mol_type="genomic DNA"
FT                   /clone="F22D6"
FT   CDS             complement(join(Z71262.1:14832..15179,
FT                   Z71262.1:15225..15386,Z71262.1:15432..15606,
FT                   Z71262.1:15659..16131,Z71262.1:16178..16573,
FT                   Z71262.1:16616..16699))
FT                   /gene="nrs-1"
FT                   /locus_tag="F22D6.3a"
FT                   /standard_name="F22D6.3a"
FT                   /product="C. elegans protein F22D6.3a, confirmed by
FT                   transcript evidence"
FT                   /note="C. elegans NRS-1 protein; contains similarity to
FT                   Pfam domains PF01336 (OB-fold nucleic acid binding domain)
FT                   , PF00152 (tRNA synthetases class II (D, K and N)) contains
FT                   similarity to Interpro domains IPR004522 (Asparaginyl-tRNA
FT                   synthetase, class IIb), IPR004364 (Aminoacyl-tRNA
FT                   synthetase, class II (D/K/N)), IPR012340 (Nucleic
FT                   acid-binding, OB-fold), IPR004365 (Nucleic acid binding,
FT                   OB-fold, tRNA/helicase-type), IPR002312 (Aspartyl-tRNA
FT                   synthetase, class IIb), IPR018150 (Aminoacyl-tRNA
FT                   synthetase, class II (D/K/N)-like)"
FT                   /db_xref="GOA:Q19722"
FT                   /db_xref="InterPro:IPR002312"
FT                   /db_xref="InterPro:IPR004364"
FT                   /db_xref="InterPro:IPR004365"
FT                   /db_xref="InterPro:IPR004522"
FT                   /db_xref="InterPro:IPR006195"
FT                   /db_xref="InterPro:IPR012340"
FT                   /db_xref="InterPro:IPR016027"
FT                   /db_xref="InterPro:IPR018150"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q19722"
FT                   /db_xref="WormBase:WBGene00003815"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="CAA95808.1"
FT                   /translation="MSKLYIDTDAGSDQHPGTEAQPLATLVQAMLISKNSGEFLMKKKS
FT                   EEGESWEPAAKAAIKKAVKKYEAEVKKLEKAGCREKEAEEAQHAALEEAKKITFSLDKS
FT                   LPEAKVIKIGESVQHRDQRVSIKAWVHRLRRQGKSLMFLVLRDGYGFLQCVLNDKLCQS
FT                   YDAVTLSTETSVQVYGIIKALPDGKSAPDGHELTVDYWEVIGKAPAGGIDNVLNESAGV
FT                   DVMLDNRHLVIRGENASRILRIRAAATRAMRDHFFAAGYTEVAPPTLVQTQVEGGSTLF
FT                   GLDYYGEPAYLTQSSQLYLETCNAALGDVYCISQSYRAEKSRTRRHLSEYQHVEAECAF
FT                   ITFDQLMDRIEALVCDTVDRLLADPVTKSLIEFVNPGYKAPARPFKRMPYKEAIEWLQK
FT                   NDVRNEMGEKFVYGEDIAEAAERRMTDTIGVPILLNRFPHGIKAFYMPRCADDNELTES
FT                   VDLLMPGVGEIVGGSMRIWKEDQLLAAFEKGGLDSKNYYWYMDQRKYGSVPHGGYGLGL
FT                   ERFICWLTDTNHIRDVCLYPRFVGRCAP"
XX
SQ   Sequence 1638 BP; 453 A; 336 C; 410 G; 439 T; 0 other; 529520746 CRC32;
     atgtccaagc tttacatcga taccgatgct ggatctgatc agcatcccgg aacagaagct        60
     cagccattgg ctactttggt tcaggctatg cttatttcga aaaactcggg cgagttcttg       120
     atgaagaaaa agtcagagga aggggaatcg tgggaaccag cagcgaaagc tgctatcaaa       180
     aaggcagtga aaaaatacga agctgaagtg aaaaagctgg agaaagctgg ttgtagggag       240
     aaagaagccg aagaggctca acatgctgct ctcgaagaag ccaagaagat tacattttct       300
     cttgacaagt ctcttccaga agctaaggtt atcaagattg gagaatctgt gcagcatcgc       360
     gatcaacgag tctcaatcaa agcctgggta catcgtcttc gtcgtcaagg aaagtcactc       420
     atgttccttg ttcttagaga cggttatgga ttccttcaat gtgttttgaa cgataagttg       480
     tgtcaaagtt atgatgctgt tactctctca acagagactt ctgttcaagt ttatggaatt       540
     atcaaggcac ttcccgatgg aaaatccgct cctgatggtc acgagcttac cgttgactat       600
     tgggaggtta ttggcaaagc accagctgga ggaattgaca acgttctcaa cgaaagcgct       660
     ggagtcgatg tgatgcttga taaccgccac cttgtcatcc gtggagagaa tgcatcaaga       720
     attcttcgta ttcgcgctgc agctactcgt gcaatgagag atcatttctt tgctgctgga       780
     tatactgaag ttgctcctcc aactttggtg caaacacaag ttgagggtgg ttccactctc       840
     tttgggcttg attattatgg agagcctgca tacttgacac aatcttctca actttatttg       900
     gagacttgca atgctgctct tggtgatgtt tattgtattt cacagtcgta cagagccgaa       960
     aaatcgagaa ctcgtcgcca tctgtcagag tatcaacacg ttgaggctga atgcgctttt      1020
     atcactttcg atcaacttat ggatcgcatt gaggctcttg tttgtgatac tgttgatcgg      1080
     cttcttgcag atccagtcac caaatcgttg atcgagttcg tgaacccggg atataaggca      1140
     ccagcccgac cattcaagag aatgccatac aaggaagcaa tcgaatggct tcagaagaat      1200
     gatgttcgca acgagatggg agaaaagttt gtgtacggtg aagatattgc tgaagctgct      1260
     gagagaagaa tgactgatac cattggagtg ccaattcttc tcaaccgttt cccacatgga      1320
     atcaaagcct tctacatgcc acgctgtgca gacgataacg agttgaccga gtccgtagat      1380
     cttttgatgc caggagttgg agaaatcgtt ggaggatcaa tgcgtatctg gaaggaagat      1440
     cagttgttgg ctgcatttga gaaaggagga cttgactcta aaaactatta ctggtacatg      1500
     gatcaacgga aatacggaag tgtaccacat ggtggatatg gattgggact ggagcgtttc      1560
     atctgctggt tgaccgacac caaccacatc cgcgacgtct gtttgtaccc gagatttgtc      1620
     ggcagatgtg ctccgtaa                                                    1638
//
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