 |
|
EBI DbfetchID CAA94369; SV 1; linear; genomic DNA; STD; INV; 3426 BP. XX PA Z70310.1 XX DE Caenorhabditis elegans C. elegans protein R11A8.6, partially confirmed by DE transcript evidence XX OS Caenorhabditis elegans OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; OC Rhabditidae; Peloderinae; Caenorhabditis. OX NCBI_TaxID=6239; XX FH Key Location/Qualifiers FH FT source 1..3426 FT /organism="Caenorhabditis elegans" FT /chromosome="IV" FT /strain="Bristol N2" FT /mol_type="genomic DNA" FT /clone="R11A8" FT CDS join(Z70310.1:14386..14489,Z70310.1:14551..15439, FT Z70310.1:15490..16004,Z70310.1:16074..16323, FT Z70310.1:16371..16631,Z70310.1:16685..17323, FT Z70310.1:17374..17892,Z70310.1:17946..18071, FT Z70310.1:18128..18250) FT /gene="irs-1" FT /locus_tag="R11A8.6" FT /standard_name="R11A8.6" FT /product="C. elegans protein R11A8.6, partially confirmed FT by transcript evidence" FT /note="C. elegans IRS-1 protein; contains similarity to FT Pfam domains PF09334 (tRNA synthetases class I (M)) (2), FT PF00133 (tRNA synthetases class I (I, L, M and V)) , FT PF08264 (Anticodon-binding domain) contains similarity to FT Interpro domains IPR015413 (Aminoacyl-tRNA synthetase, FT class I (M)), IPR013155 (Valyl/Leucyl/Isoleucyl-tRNA FT synthetase, class I, anticodon-binding), IPR002300 FT (Aminoacyl-tRNA synthetase, class Ia), IPR001412 FT (Aminoacyl-tRNA synthetase, class I, conserved site), FT IPR002301 (Isoleucyl-tRNA synthetase, class Ia), IPR015905 FT (Isoleucyl-tRNA synthetase, class Ia, N-terminal), FT IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)" FT /db_xref="GOA:Q21926" FT /db_xref="InterPro:IPR001412" FT /db_xref="InterPro:IPR002300" FT /db_xref="InterPro:IPR002301" FT /db_xref="InterPro:IPR009008" FT /db_xref="InterPro:IPR009080" FT /db_xref="InterPro:IPR013155" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR015905" FT /db_xref="InterPro:IPR018353" FT /db_xref="UniProtKB/Swiss-Prot:Q21926" FT /db_xref="WormBase:WBGene00002152" FT /func_characterised="identical sequence" FT /protein_id="CAA94369.1" FT /translation="MSGLSTVPDNINFAREEDKVAQKWQDENTFQRSVELSKDRPHFTF FT YDGPPFATGLPHYGHMLTSTIKDVVGRWAHQNGHYVERRFGWDTHGLPVEYEIDKTLGI FT SGPQDVMKMGIANYNNECRKIVMRYSGEWEKTMGRLGRWVDFKHDYKTLYPWFMESVWW FT AFSELHKKGLVYKGVKVMPFSTACSTPLSNFEAGQNYKDVVDPAVFVGFKLLDCPNRQL FT VAWTTTPWTLPSNLALVVHPDMLYVVTKDKTTGIEYVVLEERLGELKNDNLEVIEKLAG FT SQLKDLRYEPLFPYFAYMREERNAFRVLNDTFVTSDSGTGVVHQAPYFGEIDFQVCVAN FT GVIAKDQKMICPVDESGKYTSEVPDYQGVYVKDADKLIIKRLKEMGNLVRQAEVKHSYP FT FCWRSDTPLLYKAVPSWFINVETLIPRLLANNDETYWVPAFVKEKRFANWLRDARDWAV FT SRNRFWGTPINLWVSEDGEEVVCVGSIAELEELSGQKITDLHRESVDDVTIPSRSGRGV FT LKRVSEVFDCWFESGSMPYAQNHYPFENRKIFEDNFPADFIAEGIDQTRGWFYTLLVLS FT TALFNKPPFKNLICNGLVLASDGAKMSKSKKNYPDPMLIVNKYGADALRLYLINSPVVR FT GENLRFREEGVRDLLKDVFLPWFNAYRFFVQNVQAYEHETGNVFDMNVHVASENVMDRW FT IESFTNSLVAFVRKEMDSYRLYAVVGPLTKFFDTLTNIYIRLNRKRVKGDNGLHEQHHA FT LAALGRVLILIVRLMAPFTPFFCEYIWLNLKKVIGSTEESVHFLMLPKPDESLIDETVE FT RRVEVMRNVIDLVRLVRDREGLAVKYPLKEMIVINRDSQFLEDVKSLESYILLELNVRK FT LTVSQDKQKYGITLKAEPNFKILGARLKGEQKKVADYLKNQITESELEKFLLEGKLTVL FT GHELSSEEVAVSYAAGSDQGHGYKTHSDAKTIVMIDTTEDESLIEEGLCREVTNRVQRL FT RKQAKLVSTDTAHVHIVVSPADSQLAKVVAAKLNDIVSATGTPIKLGSPPAAAKAPTAT FT SKSAIKDSEVELWLFAEGDSFDGITVVDGSKKVRVHVKTEKEHLKGYADLLYHVRSALD FT LWNGKIALKNVDGSAVHPTVDVTSLVGQTLQLVR" XX SQ Sequence 3426 BP; 1003 A; 671 C; 794 G; 958 T; 0 other; 2862037825 CRC32; atgagcggcc tttcgaccgt tcccgacaac atcaattttg ccagagaaga agataaagtc 60 gctcaaaaat ggcaagatga gaatactttc caacgttctg ttgagctgtc aaaagatcgt 120 ccacatttca ctttttatga tggaccacct ttcgctactg gccttcctca ttatggtcat 180 atgcttacca gcaccatcaa agacgttgtt ggtcgctggg ctcatcaaaa cggtcactat 240 gtagaaagac ggtttggttg ggatactcat ggtcttccag tcgaatacga aatcgataag 300 acgcttggaa tcagtggtcc acaagatgtc atgaaaatgg gaatcgctaa ttacaacaat 360 gaatgccgaa agatcgttat gagatattct ggcgaatggg agaaaacaat gggacgtctt 420 ggtcgctggg tagacttcaa gcatgattac aagactctct acccgtggtt catggagtct 480 gtatggtggg ctttcagcga gttgcataag aagggccttg tctacaaagg tgtaaaagtt 540 atgcctttct ctactgcttg ttctactcca ctctccaact ttgaagctgg tcagaattac 600 aaagatgtag tagatccagc agtattcgtc ggattcaaat tactcgattg tccgaatagg 660 cagctagttg catggacaac aactccatgg acacttccat ccaatctagc tctagttgtt 720 catccagaca tgctgtatgt ggtcactaaa gataaaacga ctggaatcga atacgttgtt 780 ctggaagaac gtctcggaga gttgaaaaat gataatttgg aagttattga gaaacttgct 840 ggtagtcagc tcaaagatct caggtatgaa ccattgttcc catactttgc ctatatgcgc 900 gaagaaagaa acgcattccg ggtattgaat gacacttttg tcacctctga ctctggtacc 960 ggagttgttc atcaagcacc atatttcgga gagatcgatt tccaagtttg tgtggcgaat 1020 ggagttatcg ctaaagacca aaaaatgatc tgtccagttg atgaaagtgg aaaatacaca 1080 tcagaagttc cagattatca aggagtctac gtgaaagatg ctgataagtt gattatcaag 1140 agactcaagg aaatgggaaa tcttgtcaga caagcggaag tgaagcactc ctatccattc 1200 tgttggcggt ctgacactcc acttctctat aaggctgttc catcctggtt catcaacgtc 1260 gaaaccctga ttccaaggct tctggctaac aatgatgaga catactgggt tcccgctttt 1320 gtcaaggaaa agagatttgc taactggctt agagatgctc gcgattgggc tgtatcgaga 1380 aatcggttct ggggaactcc aatcaatttg tgggtgagcg aagatggaga ggaagttgta 1440 tgtgttggaa gtattgctga attagaagag ctttcaggac aaaaaatcac tgatcttcat 1500 agagaaagcg ttgatgatgt tacgatccca tctcgttcag gacggggagt tctcaagagg 1560 gtttccgaag tttttgattg ttggtttgaa tcaggatcca tgccatatgc ccagaatcat 1620 tatccatttg agaaccgcaa aatcttcgaa gacaatttcc cagctgattt catcgctgaa 1680 ggaattgacc aaacccgtgg gtggttttac acacttctag ttctgtcaac tgctttgttc 1740 aacaagccac cattcaagaa cctgatctgt aacggactcg tattggcgtc ggatggagca 1800 aaaatgtcaa agagtaagaa gaactatccc gatccaatgc tcattgttaa caagtacgga 1860 gccgatgctt tgcgtcttta tctcatcaac tctcctgtgg ttagaggaga aaatttgaga 1920 ttcagagaag aaggcgtaag agatcttctc aaggatgtgt tccttccatg gtttaatgcc 1980 tacagattct ttgtacaaaa cgtacaagca tatgaacatg aaactggaaa tgtgtttgac 2040 atgaacgttc atgttgccag tgaaaatgtc atggatcggt ggattgaatc ctttacaaac 2100 agtcttgttg cgtttgttcg gaaagaaatg gatagttatc ggctttatgc tgttgttgga 2160 ccgcttacaa aattctttga cactcttaca aatatctaca tcagattaaa tagaaagaga 2220 gtcaagggag acaacggact tcatgagcaa catcacgctt tggcagccct cggacgagtt 2280 ctcattttga ttgttagatt gatggctcct ttcacaccat tcttctgcga gtatatctgg 2340 ctaaatttga agaaagtcat tggttcgact gaggaatcag ttcacttcct gatgctccca 2400 aaaccggatg agagtctaat cgacgagact gtggaaagac gagttgaagt tatgagaaat 2460 gttatcgact tggttcgtct tgttcgcgat cgtgaaggac ttgctgtgaa atatccattg 2520 aaggaaatga ttgttattaa cagagacagt cagtttttgg aagacgtaaa aagtttggaa 2580 tcatatattc ttcttgagtt gaacgtcaga aaattgaccg tttcacaaga taaacagaaa 2640 tacggaatca ccctaaaggc agagccaaac ttcaaaattc tgggtgctcg tctcaaggga 2700 gaacaaaaga aggttgctga ctacttgaag aaccaaatca ctgaatctga gttggagaaa 2760 ttccttcttg aaggaaaatt gactgtgctt gggcatgagc tctcctcgga agaagttgct 2820 gttagctacg cggctggaag tgatcaagga catggataca aaactcactc ggatgcaaag 2880 accattgtaa tgattgatac aactgaagat gagtctctta ttgaagaagg actctgcaga 2940 gaagtgacaa atcgtgttca acgtcttcgc aaacaggcta aacttgtatc tactgatact 3000 gctcatgttc atattgttgt tagtccagct gattctcaac tcgcaaaggt tgttgctgcc 3060 aaattgaatg acattgtatc cgctactgga acacctatca agttgggatc accaccagcc 3120 gctgcaaagg ctccaactgc caccagcaag agtgcaatta aggattcaga agttgagctt 3180 tggttgttcg ccgaaggtga cagtttcgat gggatcactg ttgttgatgg atcaaagaaa 3240 gttcgagttc atgtgaaaac agaaaaagaa cacctgaagg gatatgctga tcttctatat 3300 cacgttcgct ctgctcttga tctctggaac ggtaagattg ccttgaagaa tgtcgatgga 3360 tcggcggtcc atccaacagt tgacgtgacg tctcttgttg gtcagactct tcaactcgta 3420 cgataa 3426 // |
|