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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAA86662; SV 1; linear; genomic DNA; STD; INV; 1524 BP.
XX
PA   Z46676.2
XX
DE   Caenorhabditis elegans C. elegans protein C08B11.2, confirmed by transcript
DE   evidence
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
OX   NCBI_TaxID=6239;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1524
FT                   /organism="Caenorhabditis elegans"
FT                   /chromosome="II"
FT                   /strain="Bristol N2"
FT                   /mol_type="genomic DNA"
FT                   /clone="C08B11"
FT   CDS             complement(join(Z46676.2:4796..5426,Z46676.2:5488..6247,
FT                   Z46676.2:6292..6424))
FT                   /gene="hda-2"
FT                   /locus_tag="C08B11.2"
FT                   /standard_name="C08B11.2"
FT                   /product="C. elegans protein C08B11.2, confirmed by
FT                   transcript evidence"
FT                   /note="C. elegans HDA-2 protein; contains similarity to
FT                   Pfam domain PF00850 Histone deacetylase domain contains
FT                   similarity to Interpro domains IPR003084 (Histone
FT                   deacetylase), IPR000286 (Histone deacetylase superfamily)"
FT                   /db_xref="GOA:Q09440"
FT                   /db_xref="HSSP:1C3P"
FT                   /db_xref="InterPro:IPR003084"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q09440"
FT                   /db_xref="WormBase:WBGene00001835"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="CAA86662.1"
FT                   /translation="MSSDKFKLDTLFDDNDEIIEPDGADVKKRNVAYYYHKDVGHFHYG
FT                   QLHPMKPQRLVVCNDLVVSYEMPKYMTVVESPKLDAADISVFHTEDYVNFLQTVTPKLG
FT                   LTMPDDVLRQFNIGEDCPIFAGLWDYCTLYAGGSVEGARRLNHKMNDIVINWPGGLHHA
FT                   KKSEASGFCYVNDIVLGILELLKYHKRVLYIDIDIHHGDGVQEAFNNSDRVMTVSFHRF
FT                   GQYFPGSGSIMDKGVGPGKYFAINVPLMAAIRDEPYLKLFESVISGVEENFNPEAIVLQ
FT                   CGSDSLCEDRLGQFALSFNAHARAVKYVKSLGKPLMVLGGGGYTLRNVARCWALETGVI
FT                   LGLRMDDEIPGTSLYSHYFTPRLLRPNLVPKMNDANSAAYLASIEKETLACLRMIRGAP
FT                   SVQMQNIVGIRLDEIEQIEENERLQKSSKSSIEYEVGKVSEKMEEECFVEEDSKPPSFP
FT                   PGQDPRRIGQYWGYDRSGLAPPRSHSDVIEEAKYEDRDRRKDLNIPGIP"
XX
SQ   Sequence 1524 BP; 470 A; 263 C; 339 G; 452 T; 0 other; 1021837273 CRC32;
     atgtcatcag acaagttcaa actagataca ctgttcgatg ataatgatga gataatcgag        60
     ccagatggag ctgatgttaa aaaaagaaat gttgcatatt attatcataa agacgtcgga       120
     cattttcatt atggccaact tcatccaatg aaacctcaac ggcttgtggt gtgcaacgat       180
     ttagtagttt cctatgaaat gccaaaatat atgacagttg ttgaatcacc aaagttagat       240
     gctgcagata tttctgtatt tcacactgaa gattacgtca actttctgca aacagtgaca       300
     ccgaagctcg gtcttacaat gcctgatgac gttttgaggc agtttaacat tggagaggat       360
     tgtccaattt tcgctggact ttgggattac tgtactttgt atgctggtgg atctgttgaa       420
     ggtgctcgac gattgaatca taaaatgaat gatattgtga ttaattggcc tggaggactt       480
     catcacgcca agaaatcaga agcttcagga ttttgctatg taaacgacat tgtgctggga       540
     attttggagt tattgaaata tcacaaacga gtattgtata tcgacattga cattcatcat       600
     ggtgatggtg ttcaggaagc attcaataat tctgatcgag ttatgactgt gtcatttcat       660
     cgttttggtc aatatttccc aggatctgga agtattatgg acaaaggtgt cggtcccgga       720
     aagtattttg cgattaatgt tcccctgatg gctgcaattc gagatgaacc ttacttaaaa       780
     ttattcgaga gtgttataag tggcgttgaa gaaaatttta atcctgaggc aattgttctt       840
     caatgtggtt ccgattcatt gtgtgaagac agacttggtc aatttgcttt gtcattcaat       900
     gcacatgcac gcgcagtcaa atacgtgaaa agtcttggaa aaccattgat ggtccttggt       960
     ggtggtggat atacacttag aaatgttgcg agatgctggg cccttgaaac tggagtcatt      1020
     ttaggtcttc gaatggacga tgaaatccct ggaacatcat tatactcgca ctatttcact      1080
     ccacgacttc ttcgcccaaa tttggttcca aaaatgaatg atgctaattc tgcggcatat      1140
     ttggcttcta ttgaaaaaga aacgctggca tgtttgagaa tgattcgtgg agcaccatca      1200
     gttcaaatgc aaaatattgt tggaatcagg ctcgacgaaa ttgagcaaat cgaagaaaat      1260
     gaacgactac aaaaatcatc aaaatcttca attgaatatg aagttggaaa agtatcagag      1320
     aaaatggaag aagaatgctt tgtagaagaa gactcaaaac ctccatcatt tccaccgggt      1380
     caagatcctc gtcggattgg tcagtactgg ggatatgaca ggtctggatt ggctccaccg      1440
     agaagtcact cggatgttat tgaagaagca aaatatgaag atcgcgacag acgaaaagat      1500
     ctcaatattc ccggaattcc gtaa                                             1524
//
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