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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAA85412; SV 1; linear; genomic DNA; STD; INV; 1266 BP.
XX
PA   Z36948.1
XX
DE   Caenorhabditis elegans C. elegans protein D2089.5, confirmed by transcript
DE   evidence
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
OX   NCBI_TaxID=6239;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1266
FT                   /organism="Caenorhabditis elegans"
FT                   /chromosome="II"
FT                   /strain="Bristol N2"
FT                   /mol_type="genomic DNA"
FT                   /clone="D2089"
FT   CDS             complement(join(Z36948.1:30822..31065,
FT                   Z36948.1:31166..31407,Z36948.1:31585..31665,
FT                   Z36948.1:31725..31833,Z36948.1:32482..32968,
FT                   Z36948.1:33378..33457,Z36948.1:34061..34083))
FT                   /gene="gbh-1"
FT                   /locus_tag="D2089.5"
FT                   /standard_name="D2089.5"
FT                   /product="C. elegans protein D2089.5, confirmed by
FT                   transcript evidence"
FT                   /note="C. elegans GBH-1 protein; contains similarity to
FT                   Pfam domain PF02668 Taurine catabolism dioxygenase TauD,
FT                   TfdA family contains similarity to Interpro domains
FT                   IPR012775 (Gamma-butyrobetaine,2-oxoglutarate dioxygenase),
FT                   IPR003819 (Taurine catabolism dioxygenase TauD/TfdA)"
FT                   /db_xref="GOA:Q19000"
FT                   /db_xref="InterPro:IPR003819"
FT                   /db_xref="InterPro:IPR012775"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q19000"
FT                   /db_xref="WormBase:WBGene00001522"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="CAA85412.1"
FT                   /translation="MLSALLIRNIRNASKLASVAGPNSDRIVNVKWSDGKTGVFPLIWL
FT                   RDTSPDPSTYTISPAMTARKLTMLEFDVEQNARKLWIDEDANCLKIEWESGVLSEFPSE
FT                   WLKIRNPSDQEARRRRRKVYLFPEQTWGKAEIEGKLKKFSHEEFMKNEQVVHDFLQAVC
FT                   IDGIAVLKGAPQGVRGAVEAIGDRIGMIKRTHFGLVFEVSLKADASNMAYASNGGLPFH
FT                   TDFPSLSHPPQLQMLHMLQSAEEGGHSLFVDGFHVAEQLRVEKPEIFKILTTQSMEYIE
FT                   EGYDVHEINGKTIRFDYDMCARHKVIRLNDDGKVNKIQFGNAMRSWFYDCEPSKVQDVY
FT                   RAMKTFTEYCYQPRNMLKFRLEDGDTVLWANQRLLHTRDGFRNAPEKARTLTGCYFDWD
FT                   IVKSRVRFLRDKLSLEQNQPSA"
XX
SQ   Sequence 1266 BP; 400 A; 234 C; 306 G; 326 T; 0 other; 3103554704 CRC32;
     atgctgtctg cccttttaat tagaaatatt cgaaacgcta gcaaattggc atcggtcgct        60
     ggtccaaact ctgatagaat tgtgaatgta aaatggagtg atggaaaaac tggtgtattc       120
     ccgttaatct ggttgcggga cacatctcca gatccatcaa cctacacaat tagccccgca       180
     atgactgctc gtaagctgac aatgttagag ttcgacgtgg aacaaaacgc tagaaaatta       240
     tggattgatg aggatgcaaa ctgtttaaaa attgaatggg aatccggagt tttgagtgaa       300
     ttcccgtcgg aatggctgaa aatccgaaac ccatcagatc aagaagcacg tcgtcgaagg       360
     aggaaggtct acttgtttcc ggaacaaacg tggggaaaag cggaaattga gggaaaactg       420
     aaaaagttca gtcatgaaga gtttatgaag aatgagcagg tagttcatga cttcctgcaa       480
     gcagtttgta tcgatggaat tgccgttttg aaaggagctc cacaaggtgt cagaggggct       540
     gttgaagcaa ttggagatag aattggaatg attaaaagga cgcattttgg gttagttttc       600
     gaagtgagct tgaaagcaga cgcctctaac atggcttatg cttcaaatgg gggactacca       660
     tttcacacgg attttccgtc tttgtcacac cctccacagc tccaaatgct ccatatgcta       720
     caaagtgcgg aagaaggagg acatagtcta tttgttgatg gatttcatgt cgcagagcag       780
     ctccgagttg aaaagccaga gatcttcaaa atcttgacca ctcaatccat ggaatacatt       840
     gaagaaggat atgatgttca tgagattaat ggaaaaacta tacgctttga ttatgacatg       900
     tgtgcaaggc acaaggttat tcggctgaat gatgacggaa aagtcaataa gatacagttc       960
     ggaaacgcca tgcgcagttg gttctacgat tgtgagccaa gcaaggttca ggatgtttat      1020
     agagcaatga aaacattcac cgaatactgc tatcaaccac gcaatatgct gaaattccgg      1080
     cttgaagacg gtgacaccgt tttatgggct aatcaacgat tattacacac tcgagatgga      1140
     ttccgaaatg ccccagaaaa ggccagaaca ctgacgggtt gctatttcga ttgggatatt      1200
     gtaaagtcac gagttcgatt tttaagagat aaactatcac tggagcagaa tcaaccttct      1260
     gcttaa                                                                 1266
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