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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAA20639; SV 1; linear; genomic DNA; STD; PRO; 1896 BP.
XX
PA   AL939128.1
XX
DE   Streptomyces coelicolor putative secreted glycosyl hydrolase
XX
OS   Streptomyces coelicolor
OC   Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
OC   Streptomycineae; Streptomycetaceae; Streptomyces.
OX   NCBI_TaxID=1902;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1896
FT                   /organism="Streptomyces coelicolor"
FT                   /strain="A3(2)"
FT                   /mol_type="genomic DNA"
FT   CDS             AL939128.1:64796..66691
FT                   /transl_table=11
FT                   /gene="SCO6542"
FT                   /gene_synonym="SC5C7.27"
FT                   /product="putative secreted glycosyl hydrolase"
FT                   /note="SC5C7.27, possible secreted glycosyl hydrolase len:
FT                   631 aa; similar to two hypothetical proteins from B.
FT                   subtilis TR:O31526 (EMBL:Z99107) yesW (620 aa), fasta
FT                   scores; opt: 2404 z-score: 2009.8 E(): 0, 57.7% identity in
FT                   620 aa overlap and TR:O31527 (EMBL:Z99107) yesX (612 aa),
FT                   fasta scores; opt: 1856 z-score: 1984.4 E(): 0, 54.4%
FT                   identity in 599 aa overlap. Contains possible N-terminal
FT                   signal sequence. Similar to TR:Q9AF09 (EMBL:AY026755)
FT                   rhamnogalacturonan lyase from Pseudomonas cellulosa (881
FT                   aa) fasta scores; opt: 2392,  Z-score: 2482.1, 59.091%
FT                   identity (61.043% ungapped) in 594 aa overlap."
FT                   /db_xref="GOA:O86724"
FT                   /db_xref="InterPro:IPR013517"
FT                   /db_xref="UniProtKB/TrEMBL:O86724"
FT                   /protein_id="CAA20639.1"
FT                   /translation="MRHPHTRPHAPHPHRRRPRALAAALAAAGLLGAGLTTLAPDTAEA
FT                   ATARQVEALDRGVVSVHTGDGNLVSWRWLGTDPDNVAFNVYRAGTKVNSSPVTGSTTYF
FT                   HSGAPSHADYTVRAVVNGTEQGDSVHAIQFRAGYKDVPISPPSGGTTPDGVSYTYEAND
FT                   ASVGDLDGDGALDLVLKWQPTNAKDNSQSGYTGNTVVDGIKLDGTRLWRVDLGRNIRSG
FT                   AHYTQFQVYDYDGDGRAEVAMKTADGTKDGTGAVIGNSSADHRNSSGYVLSGPEYLTMF
FT                   NGRTGTAMGTVDYVPARGSVSSWGDSYGNRVDRFLAGTAYLDGSRPSVIMARGYYTRTV
FT                   IAAWDWRDGRFTRRWTFDTNSSTNSGKGYDGQGNHQLSVADVDGDGRDEIVYGAMAVDD
FT                   NGYALWTTRNGHGDAMHVGDLDPSRAGLEEFKVDEDGSKPSSYLADARTGQILWSTGAS
FT                   GDNGRGVSGDIWSGSAGAESWSSAESGIRNPKGTVVGSRKPSSANFLSWWDGDTVRELL
FT                   DGTHVDKYGTSGDTRLLTGSGVASNNGTKATPVLAGDILGDWREEVVWRTSNNTALRIY
FT                   STPYDTDTRITTLLHDTQYRTALAWQNTAYNQPPHPSFFLGSGMPTAPRPSVHTP"
XX
SQ   Sequence 1896 BP; 318 A; 781 C; 574 G; 223 T; 0 other; 3384194430 CRC32;
     gtgaggcacc cccacacccg cccccacgcc ccccacccgc accgcagacg cccacgcgcc        60
     ctggccgcgg ccctcgccgc cgccgggctc ctcggcgcgg gcctgacgac gctggccccc       120
     gacaccgccg aggccgccac ggcacgccag gtcgaggccc tggaccgggg cgtcgtcagc       180
     gtccacaccg gcgacgggaa cctggtcagc tggcgctggc tgggcaccga cccggacaac       240
     gtcgcgttca acgtctaccg ggccggtacg aaggtcaact ccagccccgt caccggctcc       300
     accacctact tccactccgg cgcgccctcc cacgccgact acaccgtccg cgcggtcgtg       360
     aacggcacgg agcagggcga ctccgtccac gcgatccagt tccgggccgg ctacaaggac       420
     gtaccgatca gcccgccctc cggcggcacc acccccgacg gcgtctccta cacctacgag       480
     gccaacgacg cctccgtcgg cgacctcgac ggcgacggcg ccctcgacct cgtcctcaag       540
     tggcagccga ccaacgccaa ggacaactcc cagtccggct acaccggcaa cacggtcgtc       600
     gacggcatca agctcgacgg cacccgcctg tggcgcgtcg acctgggccg caacatccgc       660
     tccggcgccc actacaccca gttccaggtg tacgactacg acggcgacgg ccgggccgag       720
     gtcgccatga agaccgccga cggcaccaag gacggcaccg gcgcggtcat cggcaactcc       780
     tcggcggatc accgcaactc gagcggctac gtcctctccg gccccgaata cctcaccatg       840
     ttcaacggcc ggaccggcac cgcgatgggg accgtcgact acgtcccggc ccgcggctcg       900
     gtctcctcct ggggcgactc ctacggcaac cgcgtcgacc ggttcctggc gggcacggcg       960
     tacctggacg gctcccgccc ctccgtgatt atggcgcgcg ggtactacac gcgcacggtg      1020
     atcgcggcct gggactggcg ggacggccgg ttcacccgcc gctggacctt cgacaccaac      1080
     tcctccacca acagcggcaa gggctacgac ggccagggca accaccagct ctccgtcgcg      1140
     gacgtggacg gtgacggccg ggacgagatc gtctacggcg cgatggccgt cgacgacaac      1200
     ggctacgccc tgtggaccac caggaacggc cacggcgacg ccatgcacgt cggcgacctc      1260
     gacccgtccc gggcgggcct ggaggagttc aaggtcgacg aggacggctc gaagccctcg      1320
     tcgtacctgg cggacgcccg cacgggccag atcctctggt ccaccggcgc gagcggcgac      1380
     aacggccgcg gtgtctccgg ggacatctgg tcgggcagcg cgggcgccga gtcctggtcg      1440
     tccgcggaga gcggcatccg caaccccaag ggcaccgtcg tcggcagccg caagccctcc      1500
     agcgccaact tcctttcctg gtgggacggc gacaccgtcc gtgaactcct cgacggcacc      1560
     cacgtcgaca agtacggcac ctcgggcgac acccgcctgc tcaccggctc cggcgtcgcc      1620
     tccaacaacg gcaccaaggc caccccggtc ctggccggcg acatcctcgg cgactggcgc      1680
     gaggaggtcg tctggcgcac gtcgaacaac acggccctgc gcatctactc caccccctac      1740
     gacacggaca cccgcatcac gaccctcctc cacgacaccc agtaccgcac cgcactggcc      1800
     tggcagaaca ccgcctacaa ccagccaccg cacccgagct tcttcctcgg aagcgggatg      1860
     ccgacggccc cccggccgtc ggtccacacg ccctga                                1896
//
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