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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAA18111; SV 1; linear; genomic DNA; STD; PLN; 1185 BP.
XX
PA   AL022140.1
XX
DE   Arabidopsis thaliana (thale cress) pectate lyase like protein
XX
OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
OX   NCBI_TaxID=3702;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1185
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="4"
FT                   /variety="Columbia"
FT                   /mol_type="genomic DNA"
FT   CDS             complement(join(AL022140.1:74368..74589,
FT                   AL022140.1:75042..75180,AL022140.1:75265..75368,
FT                   AL022140.1:75468..76187))
FT                   /gene="AT4g22080"
FT                   /product="pectate lyase like protein"
FT                   /note="strong similarity to pectate lyase, Zinnia elegans,
FT                   PATX:E283787"
FT                   /note="Contains EF-hand calcium-binding domain AA315-327"
FT                   /note="contains EST gb:N65314, AW004514.1, AI995567.1"
FT                   /db_xref="GOA:O65456"
FT                   /db_xref="InterPro:IPR012334"
FT                   /db_xref="UniProtKB/Swiss-Prot:O65456"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="CAA18111.1"
FT                   /translation="MTLFTVSCLLVVLFLCHSLVHAENNGYYGYTPTVANYLPEKPQNI
FT                   MNPVDSCWRLKSDWAANRKDLADCVVGFGSSTLGGKKGNLYVVTNPYDNAQNPQPGSLR
FT                   YGVIQAKPLWITFAKDMVITLENELMVNSYKTIDGRGAKVEIAYGPCITIQDVTNVIVH
FT                   GISIHDCKPGKYGMVRSSPTHVGHRKGSDGDAIAIFGSSNIWIDHCYLASCTDGLIDVI
FT                   HASTGITISNNYFTQHDKVMLLGHNDDFVQDVKMKVTVAFNHFGPGLVERMPRVRRGYA
FT                   HVANNRYDKWIMYAIGGSADPTIFSEGNYFIASDKSNSKEVTKREVKGGWNNWRWRTSK
FT                   DVFKNGAYFVPSGYGSISLPYSSAQRFTVAPGNLVPSLTADAGPLNCNRNGPCY"
XX
SQ   Sequence 1185 BP; 332 A; 261 C; 291 G; 301 T; 0 other; 1685946802 CRC32;
     atgactcttt tcaccgtttc gtgcctcctc gtggtactat tcttatgtca ttccttggtc        60
     catgccgaaa ataatggtta ttacgggtat acccccacgg ttgccaacta cctccccgag       120
     aaaccgcaga acatcatgaa tccggtggac tcctgttggc ggctcaagtc tgactgggct       180
     gccaatcgta aagacctagc ggattgcgtg gttggattcg gttcatctac cttgggcgga       240
     aagaaaggta atttatacgt tgtcacaaac ccttacgaca atgcacagaa tcctcaacca       300
     ggttctttgc ggtacggcgt gatccaagcc aaaccattgt ggatcacttt cgctaaggat       360
     atggtcataa ccctagaaaa tgagctcatg gtcaatagct ataaaaccat tgatgggaga       420
     ggggcaaaag tagaaatcgc atacggacca tgcatcacga tacaagacgt gacgaacgta       480
     atcgtgcacg ggatcagcat ccacgactgc aaaccgggga agtacggtat ggtgaggagt       540
     agcccgacgc atgttggtca ccgtaaggga tcggacggtg atgcgatcgc tattttcggt       600
     tcatcgaata tttggatcga tcattgttac ctagcgagtt gtacggacgg gctcatcgat       660
     gtgatccatg cttccacggg aatcactatt tccaacaact atttcactca gcatgacaaa       720
     gtgatgttac ttgggcacaa cgatgatttt gtgcaagatg tgaaaatgaa agtgaccgtg       780
     gcattcaatc attttggacc aggacttgtg gagagaatgc caagagtaag acgagggtac       840
     gctcatgtgg caaacaatag atacgataaa tggataatgt atgcaattgg tggtagcgcc       900
     gatccaacca tttttagtga aggcaactat ttcattgctt ctgataaatc taacagcaaa       960
     gaggtgacga agagagaagt aaaaggagga tggaacaatt ggagatggag aacctcaaaa      1020
     gatgttttca agaacggagc ttacttcgta ccttctggtt atggcagcat ttcgctacct      1080
     tacagttctg ctcagcgatt cacagtagct ccgggaaact tggttccttc tttaactgca      1140
     gacgctggcc ctctaaactg caaccgcaac ggcccttgtt attag                      1185
//
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