spacer
spacer
EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BAD45497; SV 1; linear; genomic DNA; STD; PLN; 1686 BP.
XX
PA   AP003727.3
XX
DE   Oryza sativa Japonica Group putative sphingosine-1-phosphate lyase
XX
OS   Oryza sativa Japonica Group
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade;
OC   Ehrhartoideae; Oryzeae; Oryza.
OX   NCBI_TaxID=39947;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1686
FT                   /organism="Oryza sativa Japonica Group"
FT                   /chromosome="1"
FT                   /cultivar="Nipponbare"
FT                   /mol_type="genomic DNA"
FT                   /clone="P0672D08"
FT   CDS             join(AP003727.3:32545..32741,AP003727.3:32829..32874,
FT                   AP003727.3:33319..33470,AP003727.3:33620..33679,
FT                   AP003727.3:34396..34620,AP003727.3:34694..34835,
FT                   AP003727.3:35078..35128,AP003727.3:35236..35327,
FT                   AP003727.3:36121..36247,AP003727.3:36472..36553,
FT                   AP003727.3:36741..36848,AP003727.3:36937..36991,
FT                   AP003727.3:37258..37404,AP003727.3:37505..37583,
FT                   AP003727.3:37687..37809)
FT                   /codon_start=1
FT                   /gene="P0672D08.8"
FT                   /product="putative sphingosine-1-phosphate lyase"
FT                   /note="contains EST(s): C19281(E10207)"
FT                   /db_xref="GOA:Q52RG7"
FT                   /db_xref="InterPro:IPR015421"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q52RG7"
FT                   /func_characterised="similar sequence"
FT                   /protein_id="BAD45497.1"
FT                   /translation="MELAMDFALRLRDAANHHLSRYEPLVLLAAPLLALLAARTLHAAA
FT                   AAVADRGLRTVLLALAMTAIKLLPGVSAYINAEKRKVVDQLQSGGTSTKSTLRTELPTV
FT                   GLSNQVINDLETLKARDVNWQGKCSGTVYIAGSESEGHFALINKAYSMFSHTNPLHQDV
FT                   FKSVAQLEAEVVAMTAALLGIKEKSSGGQICGNMTSGGTESILLAVKTSRDYMRTKKGI
FT                   TKPEMIIAESAHSAYDKAAQYFNIKVRRVPVNKEFLADVKGFKRCINGNTIMMVGSAPG
FT                   FPHGLIDPIEELGELASRYDICLHVDLCLGGFVLPFARKLGYPIPPFDFCVKGVTSIST
FT                   DVHKYGLAPKGTSIVLYKNHEIRKISWLSLHNYYSLTDMIMLQNCTKMFKQVTEWTGGL
FT                   YVSPTIAGSRPGGLIAGAWAAMTSLGLNGYMENTGHIMEVSKKIQRGIEDIPGLFVIGK
FT                   PDMTVVAFGSDSVDIFEVNDIMSSKGWHLNALQRPNSLHICVTLQHTVIYEEFLKDLKD
FT                   SVDTVKANPGPISGGRAPIYGAAGKMPDRGMVRELLVEFMDASC"
XX
SQ   Sequence 1686 BP; 457 A; 379 C; 422 G; 428 T; 0 other; 1924803563 CRC32;
     atggagctcg ccatggattt tgcgctccgc ctccgcgacg ccgccaacca ccacctctcc        60
     cgctacgagc ctctcgtgct cctcgccgcg cccctcctcg ccctcctcgc tgcccgcacc       120
     ctccacgccg ccgctgccgc cgtcgccgac cgcggtctcc gcaccgtcct cctcgctcta       180
     gccatgacag ccatcaagtt gcttccggga gttagcgcct acatcaacgc tgagaagagg       240
     aaggttgttg accagctgca gtcaggtggc acgtccacaa aaagtactct gcggaccgag       300
     ttgccaactg ttgggctttc caaccaagtg ataaacgatc tcgaaacact gaaagctaga       360
     gatgtaaact ggcagggaaa atgctctggc acagtttata ttgctgggag tgaatccgaa       420
     ggtcattttg cattgataaa caaggcttac tctatgtttt cacacaccaa cccacttcac       480
     caggacgtat tcaagagtgt ggcacaatta gaggctgaag tagttgcaat gacagctgct       540
     ttgcttggca tcaaagaaaa atcatccggt ggacagattt gtggtaatat gacatcgggc       600
     ggaactgaaa gcatattatt agcagtaaaa acatcacgcg actatatgcg aacaaagaag       660
     ggcattacaa agcctgaaat gataattgcc gaatcagcac attctgcata cgataaagct       720
     gctcaatatt tcaatattaa agtgcggcgt gtgccagtga acaaagagtt tcttgcagat       780
     gtgaaaggat tcaaaaggtg tataaacgga aatacgataa tgatggtggg gtctgcacca       840
     ggatttcctc atggtttaat tgatcctatt gaggaacttg gggagttggc ttcacgatat       900
     gacatttgct tgcatgttga tctctgcctt ggtggatttg tattgccttt cgctcgtaag       960
     cttgggtacc ctattcctcc attcgacttc tgtgtcaagg gagttacatc aatctcaact      1020
     gatgttcata agtatggatt agccccaaaa gggacaagca ttgtcctata taaaaatcat      1080
     gaaattagaa agatatcatg gttgtcgtta cataactatt acagcttaac agatatgatc      1140
     atgttgcaaa actgcacgaa aatgttcaaa caggttactg aatggactgg tgggctctat      1200
     gtttcaccta ctattgctgg aagtaggcct ggtgggttga tagcgggagc ttgggctgct      1260
     atgacgtctc ttggactgaa cggttatatg gaaaatacag gtcatatcat ggaagtgtcg      1320
     aagaaaatac aaagagggat tgaagatatc ccagggttgt ttgtgattgg aaagccagac      1380
     atgactgtcg tggcatttgg ctcagattcg gttgatatat ttgaggtgaa cgacataatg      1440
     tcatcaaaag gctggcacct taatgctctg cagagaccca acagtttaca catttgtgtg      1500
     acactgcagc acacggtcat atatgaggaa ttcctgaagg atctgaaaga ttcagtggac      1560
     actgtaaaag caaatccagg gcctattagc ggggggcgag ctccgattta cggagctgct      1620
     ggcaagatgc cggacagagg catggtcagg gagctgctgg tggagttcat ggacgcgtct      1680
     tgctga                                                                 1686
//
spacer
spacer