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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BAD17132; SV 1; linear; genomic DNA; STD; PLN; 1197 BP.
XX
PA   AP004817.3
XX
DE   Oryza sativa Japonica Group putative (1-4)-beta-mannan endohydrolase
XX
OS   Oryza sativa Japonica Group
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade;
OC   Ehrhartoideae; Oryzeae; Oryza.
OX   NCBI_TaxID=39947;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1197
FT                   /organism="Oryza sativa Japonica Group"
FT                   /chromosome="2"
FT                   /cultivar="Nipponbare"
FT                   /mol_type="genomic DNA"
FT                   /clone="P0539D10"
FT   CDS             complement(join(AP004817.3:146491..146851,
FT                   AP004817.3:146934..147130,AP004817.3:147237..147359,
FT                   AP004817.3:147518..147679,AP004817.3:147768..148121))
FT                   /codon_start=1
FT                   /gene="P0539D10.41"
FT                   /product="putative (1-4)-beta-mannan endohydrolase"
FT                   /db_xref="GOA:Q6Z310"
FT                   /db_xref="InterPro:IPR018087"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q6Z310"
FT                   /func_characterised="similar sequence"
FT                   /protein_id="BAD17132.1"
FT                   /translation="MGSKRRVILLPTLGVVVLAIAAAVLLHAGEAADVANGQFARASGT
FT                   RFTVGGRPFYSNGFNAYWLMYMASDPGDRSKAAGVLQQAASLRATLVRTWAFSDGGYRP
FT                   LQKSPGVYNEDMFMGLDFVIAEAKKRGLYLILSLVNNWDGFGGKKQYVQWARDQGHNLG
FT                   SDDDFFRSDAVLTRVNKITGVAYKDDPTIFAWELINEPRCQSDLSGKTLQAWVTEMAGY
FT                   VKSVDPNHMVEIGLEGFYGESMHKNFNPGYTVGTDFIANNLVPAVDFATIHSYPDQWVS
FT                   GASSDEQVAFMRKWMADHIRDSAAVLRKPLLVTEFGWSARSNGYTVAARDAYFRTVYDA
FT                   VYASAREGGACAGGLFWQVMAPGMESWTDGYEVVLERSKSTADVVAHQCARIAGLSPA"
XX
SQ   Sequence 1197 BP; 227 A; 356 C; 421 G; 193 T; 0 other; 1909375805 CRC32;
     atggggagca aacggcgagt aatcttgctg ccaactttgg gcgtcgtcgt cctggccatc        60
     gcggcagccg tcctcttgca cgccggcgag gcggccgacg tcgccaacgg gcaattcgcg       120
     agggcgagcg ggacgcggtt cacggtgggt ggccggccgt tctactcgaa cggcttcaac       180
     gcgtactggc tcatgtacat ggcgtccgac cccggcgacc ggagcaaggc ggccggcgtc       240
     ctccagcagg cggcgagcct ccgcgcgacg ctggtgagga cgtgggcgtt cagcgacggc       300
     ggctaccggc cgctgcagaa gtcccccggc gtgtacaacg aggacatgtt catgggacta       360
     gattttgtga tagccgaagc gaagaaacga gggctgtatc tgatactgag cctggtgaac       420
     aactgggacg gattcggcgg gaagaagcag tacgtgcagt gggctaggga tcagggacac       480
     aacctgggct ctgacgacga cttcttccgg agcgacgccg tcctgaccag agtgaacaag       540
     ataaccggag tggcgtacaa ggacgatccg accatctttg catgggagct catcaacgag       600
     cctcgctgcc agagcgacct ctccggaaaa acacttcagg cttgggtcac ggagatggcc       660
     gggtacgtga aatccgtgga tccgaaccac atggtggaga tcgggctgga agggttctac       720
     ggcgagtcga tgcacaagaa cttcaacccg ggctacaccg tcggcaccga cttcatcgcc       780
     aacaacctcg tccccgctgt cgacttcgcc acgatccact cctaccccga ccaatgggtg       840
     tccggcgcga gcagcgacga gcaggtggcg ttcatgagga agtggatggc cgaccacatc       900
     cgcgactcgg cggcggtgct ccggaagccg ctgctggtga cggagttcgg gtggtcggcg       960
     aggtcgaacg ggtacacggt ggcggcgcgg gacgcctact tccgcacggt gtacgacgcg      1020
     gtgtacgcgt cggcgcggga gggcggcgcg tgcgccggtg gcctcttctg gcaggtgatg      1080
     gcgcccggga tggagagctg gaccgacggc tacgaggtgg tgctcgagcg cagcaagtct      1140
     acggccgacg tcgtcgctca ccagtgcgcc aggatcgccg gactcagccc ggcctag         1197
//
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