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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BAB62623; SV 1; linear; genomic DNA; STD; PLN; 1674 BP.
XX
PA   AP003610.2
XX
DE   Oryza sativa Japonica Group putative sphingosine-1-phosphate lyase
XX
OS   Oryza sativa Japonica Group
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade;
OC   Ehrhartoideae; Oryzeae; Oryza.
OX   NCBI_TaxID=39947;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1674
FT                   /organism="Oryza sativa Japonica Group"
FT                   /chromosome="1"
FT                   /cultivar="Nipponbare"
FT                   /mol_type="genomic DNA"
FT                   /clone="P0402A09"
FT   CDS             join(AP003610.2:19685..19869,AP003610.2:19957..20002,
FT                   AP003610.2:20447..20598,AP003610.2:20748..20807,
FT                   AP003610.2:21524..21748,AP003610.2:21822..21963,
FT                   AP003610.2:22206..22256,AP003610.2:22364..22455,
FT                   AP003610.2:23249..23375,AP003610.2:23600..23681,
FT                   AP003610.2:23869..23976,AP003610.2:24065..24119,
FT                   AP003610.2:24386..24532,AP003610.2:24633..24711,
FT                   AP003610.2:24815..24937)
FT                   /codon_start=1
FT                   /gene="P0402A09.4"
FT                   /product="putative sphingosine-1-phosphate lyase"
FT                   /note="contains EST C19281(E10207)"
FT                   /db_xref="GOA:Q52RG7"
FT                   /db_xref="InterPro:IPR015421"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q52RG7"
FT                   /func_characterised="similar sequence"
FT                   /protein_id="BAB62623.1"
FT                   /translation="MDFALRLRDAANHHLSRYEPLVLLAAPLLALLAARTLHAAAAAVA
FT                   DRGLRTVLLALAMTAIKLLPGVSAYINAEKRKVVDQLQSGGTSTKSTLRTELPTVGLSN
FT                   QVINDLETLKARDVNWQGKCSGTVYIAGSESEGHFALINKAYSMFSHTNPLHQDVFKSV
FT                   AQLEAEVVAMTAALLGIKEKSSGGQICGNMTSGGTESILLAVKTSRDYMRTKKGITKPE
FT                   MIIAESAHSAYDKAAQYFNIKVRRVPVNKEFLADVKGFKRCINGNTIMMVGSAPGFPHG
FT                   LIDPIEELGELASRYDICLHVDLCLGGFVLPFARKLGYPIPPFDFCVKGVTSISTDVHK
FT                   YGLAPKGTSIVLYKNHEIRKISWLSLHNYYSLTDMIMLQNCTKMFKQVTEWTGGLYVSP
FT                   TIAGSRPGGLIAGAWAAMTSLGLNGYMENTGHIMEVSKKIQRGIEDIPGLFVIGKPDMT
FT                   VVAFGSDSVDIFEVNDIMSSKGWHLNALQRPNSLHICVTLQHTVIYEEFLKDLKDSVDT
FT                   VKANPGPISGGRAPIYGAAGKMPDRGMVRELLVEFMDASC"
XX
SQ   Sequence 1674 BP; 455 A; 375 C; 418 G; 426 T; 0 other; 1621492466 CRC32;
     atggattttg cgctccgcct ccgcgacgcc gccaaccacc acctctcccg ctacgagcct        60
     ctcgtgctcc tcgccgcgcc cctcctcgcc ctcctcgctg cccgcaccct ccacgccgcc       120
     gctgccgccg tcgccgaccg cggtctccgc accgtcctcc tcgctctagc catgacagcc       180
     atcaagttgc ttccgggagt tagcgcctac atcaacgctg agaagaggaa ggttgttgac       240
     cagctgcagt caggtggcac gtccacaaaa agtactctgc ggaccgagtt gccaactgtt       300
     gggctttcca accaagtgat aaacgatctc gaaacactga aagctagaga tgtaaactgg       360
     cagggaaaat gctctggcac agtttatatt gctgggagtg aatccgaagg tcattttgca       420
     ttgataaaca aggcttactc tatgttttca cacaccaacc cacttcacca ggacgtattc       480
     aagagtgtgg cacaattaga ggctgaagta gttgcaatga cagctgcttt gcttggcatc       540
     aaagaaaaat catccggtgg acagatttgt ggtaatatga catcgggcgg aactgaaagc       600
     atattattag cagtaaaaac atcacgcgac tatatgcgaa caaagaaggg cattacaaag       660
     cctgaaatga taattgccga atcagcacat tctgcatacg ataaagctgc tcaatatttc       720
     aatattaaag tgcggcgtgt gccagtgaac aaagagtttc ttgcagatgt gaaaggattc       780
     aaaaggtgta taaacggaaa tacgataatg atggtggggt ctgcaccagg atttcctcat       840
     ggtttaattg atcctattga ggaacttggg gagttggctt cacgatatga catttgcttg       900
     catgttgatc tctgccttgg tggatttgta ttgcctttcg ctcgtaagct tgggtaccct       960
     attcctccat tcgacttctg tgtcaaggga gttacatcaa tctcaactga tgttcataag      1020
     tatggattag ccccaaaagg gacaagcatt gtcctatata aaaatcatga aattagaaag      1080
     atatcatggt tgtcgttaca taactattac agcttaacag atatgatcat gttgcaaaac      1140
     tgcacgaaaa tgttcaaaca ggttactgaa tggactggtg ggctctatgt ttcacctact      1200
     attgctggaa gtaggcctgg tgggttgata gcgggagctt gggctgctat gacgtctctt      1260
     ggactgaacg gttatatgga aaatacaggt catatcatgg aagtgtcgaa gaaaatacaa      1320
     agagggattg aagatatccc agggttgttt gtgattggaa agccagacat gactgtcgtg      1380
     gcatttggct cagattcggt tgatatattt gaggtgaacg acataatgtc atcaaaaggc      1440
     tggcacctta atgctctgca gagacccaac agtttacaca tttgtgtgac actgcagcac      1500
     acggtcatat atgaggaatt cctgaaggat ctgaaagatt cagtggacac tgtaaaagca      1560
     aatccagggc ctattagcgg ggggcgagct ccgatttacg gagctgctgg caagatgccg      1620
     gacagaggca tggtcaggga gctgctggtg gagttcatgg acgcgtcttg ctga            1674
//
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