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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BAB09239; SV 1; linear; genomic DNA; STD; PLN; 1179 BP.
XX
PA   AB009050.1
XX
DE   Arabidopsis thaliana (thale cress) pectate lyase
XX
OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
OX   NCBI_TaxID=3702;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1179
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /ecotype="Columbia"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="Mitsui P1"
FT                   /clone="MDF20"
FT   CDS             join(AB009050.1:47629..48443,AB009050.1:48536..48674,
FT                   AB009050.1:48854..49078)
FT                   /codon_start=1
FT                   /product="pectate lyase"
FT                   /note="gene_id:MDF20.16"
FT                   /db_xref="GOA:Q9FM66"
FT                   /db_xref="InterPro:IPR002022"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9FM66"
FT                   /inference="non-experimental evidence, no additional
FT                   details recorded"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="BAB09239.1"
FT                   /translation="MSIVCTFFLFLLNTSFAFAFAIPKPPIVRRLSTTVTSNSTASSCS
FT                   ANGNPIDECWRCDENWKDNRKNLADCAVGFGRDSIGGRAGEFYTVTDSGDDNPLNPTPG
FT                   TLRYAATQDQPLWIIFDRDMVIQLKQDLQVASYKTIDGRGNNVQIAYGPCLTLYKVSNI
FT                   IINNLYIHDCVPVKRNALSSLGGYSDGDGISIFESRDIWIDHCTLEKCYDGLIDAVNGS
FT                   TDITISNSYMLNHNEVMLLGHSDEYSGDRDMRVTIAFNYFGEGLVQRMPRCRHGYFHIV
FT                   NNIYRDWKMYAIGGSANPTIFSQGNVFIASNNQFTKEVTKRESADGDEEWKEWNWKSEG
FT                   DEMVNGAFFTPSGKEDSPSYAKFSSMVARPASLLKTTHPSVGVLSCEIDQAC"
XX
SQ   Sequence 1179 BP; 360 A; 211 C; 278 G; 330 T; 0 other; 1236552863 CRC32;
     atgtcaattg tatgtacgtt tttcttgttt ctcttaaaca cttcttttgc gtttgcattt        60
     gcgattccta aaccgccaat agtaaggaga ctatcaacga cagtgacatc aaattcaaca       120
     gcgtcttctt gctcagccaa tggaaatcca atcgatgagt gttggagatg cgacgaaaac       180
     tggaaggaca accgcaaaaa cctcgcggat tgcgcggttg gattcggacg cgactcaatt       240
     ggcggtagag ccggggagtt ctacacggtg actgattcag gagacgacaa tcctctaaat       300
     ccaactccag gtacattacg gtacgctgcg acacaagatc aacctctatg gatcattttt       360
     gatcgagaca tggtaataca actaaaacaa gatcttcaag tagcttcata caaaaccatt       420
     gatggtagag gaaataacgt acaaatagct tatggaccgt gtttaacttt atataaagtt       480
     agtaacatta ttataaacaa tctttatatt cacgattgtg ttcccgtgaa acggaatgct       540
     ttatcgtcgt tgggaggata ctcggatgga gatggaatat cgatattcga gtctcgagat       600
     atttggattg atcattgtac gttagagaaa tgttacgatg ggcttattga tgcggtgaat       660
     ggatccacgg atataacgat ttcgaatagt tacatgttga atcataatga agtcatgctt       720
     ttgggccata gtgatgagta ttccggtgat cgggatatgc gagttacgat cgcgtttaac       780
     tattttggtg aaggacttgt ccaaagaatg ccaaggtgta ggcatggata ttttcacata       840
     gtgaataaca tttatagaga ctggaagatg tatgctattg gtggaagtgc taatccaacg       900
     atctttagcc aaggaaatgt tttcatagct tccaataatc agttcaccaa ggaggttaca       960
     aagcgagaga gtgcagatgg agacgaagaa tggaaggaat ggaactggaa atcagaagga      1020
     gacgaaatgg ttaacggagc tttctttaca ccgtcaggga aagaggattc tccgagctac      1080
     gcgaaatttt cgagtatggt agctcgacca gcttcacttc tcaagaccac acatccatca      1140
     gtaggtgttc ttagttgcga aattgaccaa gcttgttaa                             1179
//
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