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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BAB01216; SV 1; linear; genomic DNA; STD; PLN; 1350 BP.
XX
PA   AP000740.1
XX
DE   Arabidopsis thaliana (thale cress) pectate lyase
XX
OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
OX   NCBI_TaxID=3702;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1350
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="3"
FT                   /ecotype="Columbia"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="Mitsui P1"
FT                   /clone="MSD24"
FT   CDS             complement(join(AP000740.1:17693..17733,
FT                   AP000740.1:17889..18096,AP000740.1:18174..18312,
FT                   AP000740.1:18396..18499,AP000740.1:18667..19309,
FT                   AP000740.1:20059..20133,AP000740.1:20243..20302,
FT                   AP000740.1:20392..20471))
FT                   /codon_start=1
FT                   /product="pectate lyase"
FT                   /note="gene_id:MSD24.4"
FT                   /db_xref="GOA:Q9LJ42"
FT                   /db_xref="InterPro:IPR012334"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9LJ42"
FT                   /inference="non-experimental evidence, no additional
FT                   details recorded"
FT                   /func_characterised="similar sequence"
FT                   /protein_id="BAB01216.1"
FT                   /translation="MVIFSRSFLALSTTLIILALCINSSTMAQETEDLNSHSSSNSSTA
FT                   NKLPNDDGAWNEHAVKNPEEVAAMVDMKIKNSTERRRLGFFSCATGNPIDDCWRCDRNW
FT                   HLRRKRLANCAIGFGRNAIGGRDGRYYVVTDPSDHDAVNPRPGTLRHAVIQDRPLWIVF
FT                   KRDMVITLTQELIMNSFKTIDGRGVNVAIAGGACITIQYVTNIIIHGINVHDCRRTGNA
FT                   MVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNYM
FT                   THHNEVMLMGHSDSYTRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMY
FT                   AIGGSANPTINSQGNRFLAPGNPFAKEVTKRVGSWQGEWKQWNWRSQGDLMLNGAYFTK
FT                   SGAAAPASYARASSLGAKPASVVSMLTYSSGALKCRIDSSLPPLVNLGQL"
XX
SQ   Sequence 1350 BP; 388 A; 284 C; 326 G; 352 T; 0 other; 4049636682 CRC32;
     atggtgatct ttagcagaag cttcttagct ctctcaacga ctctaatcat tctagcatta        60
     tgtataaatt catcaacaat ggctcaagaa acagaggacc taaactctca tagctcgagt       120
     aattcatcaa cggctaataa gttacctaac gacgacggtg catggaatga acacgcagtt       180
     aaaaacccag aagaagtagc tgcaatggtc gatatgaaaa taaagaacag tacagagcgg       240
     aggaggttag gattcttctc atgcgccacc ggaaacccaa tagacgactg ttggagatgt       300
     gatcggaatt ggcatctccg acgaaagcgt ctcgcgaatt gcgcgatcgg attcggtcgt       360
     aacgctatcg gaggacgaga tggtcgttac tacgtagtca cagatccatc tgaccacgac       420
     gcggttaatc cacgaccagg aacactccgt cacgctgtga tacaagaccg tccgttatgg       480
     atcgtcttca agcgagacat ggtgattact ctaactcaag agctaatcat gaacagcttc       540
     aaaacaatcg atggaagagg cgtgaacgtt gcaatcgcag gcggtgcttg tattacgatt       600
     cagtatgtga cgaatattat catccatggg attaatgtac atgattgtag aagaactggt       660
     aatgctatgg ttcgaagctc gccgtcgcat tatgggtgga ggactatggc ggatggtgat       720
     gctatatcga tatttggatc gagtcatatt tggattgatc ataactcttt gtctaattgt       780
     gctgatggtt tgattgatgc tattatggga tctactgcta ttactatctc caataactac       840
     atgactcacc acaacgaggt tatgttgatg gggcatagtg attcgtacac tagagacaag       900
     ttgatgcaag tgacaatagc atataaccat tttggggaag ggcttataca gagaatgccg       960
     aggtgtagac atggttattt ccatgttgta aacaatgatt atactcattg ggtaatgtat      1020
     gcaattggtg gaagtgctaa ccctactatc aatagtcaag gcaatcgttt ccttgccccg      1080
     ggcaaccctt tcgccaaaga ggtgacaaag agggtaggtt catggcaagg ggaatggaag      1140
     caatggaact ggagatctca aggagaccta atgctcaacg gtgcctactt cactaaatct      1200
     ggagctgctg ctcctgcaag ctatgccaga gcctctagct tgggagctaa accagcttct      1260
     gtagtaagta tgcttaccta cagctccggt gcccttaaat gcaggatcga ctcttctctg      1320
     cctccactcg tcaacctagg ccagctttga                                       1350
//
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