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EBI DbfetchID ABY87071; SV 1; linear; genomic RNA; STD; VRL; 6627 BP. XX PA EU260464.1 XX DE Chapare virus L polymerase XX OS Chapare virus OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus; OC New world arenaviruses; unclassified New world arenaviruses. OX NCBI_TaxID=499556; XX FH Key Location/Qualifiers FH FT source 1..6627 FT /organism="Chapare virus" FT /segment="L" FT /host="Homo sapiens" FT /strain="810419" FT /mol_type="genomic RNA" FT /country="Bolivia:Samuzabeti, Chapare Province, Cochabamba FT Department" FT /isolation_source="human sera" FT /collection_date="2003" FT CDS complement(EU260464.1:442..7068) FT /codon_start=1 FT /product="L polymerase" FT /db_xref="GOA:B2C4J3" FT /db_xref="InterPro:IPR010453" FT /db_xref="UniProtKB/Swiss-Prot:B2C4J3" FT /func_characterised="identical sequence" FT /protein_id="ABY87071.1" FT /translation="MDTFLLELKDLVRKYVPELVELSFQKDALLSQVHPRLVLVEGFKL FT LSLLVELESCKVNACRHNFEQKFVDVILSDHGVICPTLPKVTPDGFNLMGKTLILLETF FT VRVNPNDFERKWKADMSKLMSLKDDLARVGITMVPVVDGRGSYNTSYLPEWATERLRWL FT LIEILKGVKATSEIEIEDQEYQRLIHSLAKANNQSMGFENLEFLKRRLLSYDQLLDTSL FT LVGIRNDVRESKIIEELIKIKLWYKTEIFNKGLGKFKRTNKSNLLSDLLKIGLHQDSDT FT INCMFCSCKILELCYTLSNKLSIDHSKEEMKDDEVGGKQPVCISYSSLLSICNKIKGSK FT IFNTRRNTLLFLDLIMLNFIVDEMIQDDSVVDSLRGAGFIIGQMVVLVNDRALDILAAM FT KLIRHKLGNSKDWLSVCGKVLKRYDEEMWKEVKTYIKEPDFDMLFQLAKSLVSERPIMR FT YTVHKDNESRCLHQNSLNISDQSFKAMLKALSHVSLSLINSMKTSFSSRLLINEKDYSR FT YYGNVRLKECYVQRFPISSRVTGYLFYQKTGERSRCYSLYISENGELSELGSFYCDPKR FT FFLPVFSEDTIVSMCNEMVCWLDFDEQLVELVKPKLRSLVLLLLCSPSKRNQTFIQGLR FT YFIMAYANQAHHVDLMSKLEIECKSSSEIQLQRLAVTLFELVLSTGDDKDFGFARRFKF FT LLNISYLCHFVTKETPDRLTDQIKCFEKFLEPKLNFNSVIVNPSLSGILTEAQEEIMTS FT SVNRFFQKNLTNISDVKEPGVSKELISFCVSLFNRGKLRVSGDLKVDPFRPSFTSTALD FT LSSNKSVVVPKLDELGNALSKYDKQMMISSCVTTLTEMFKTKGRYNLDPDSLDFLVLKN FT LSNLVSVSVSKGQMKEELSLLYDTLSEEQLESFEQIKQDVQLTLSRMKESKCNNVGLGN FT SRKVNKHLSKSELLETLWSPYQVLRAIKNEVSIHEIKDFDPDIIEHETVKKLCDEVYQS FT SNKLEFFLEEPLKSVPLEFLLKNLTTIAYEETDYLECFKYLLIQGGFDQKLGSYEHKSR FT SRLGLSSEALRVQEDARVSTRESNAEAIAKKLDKTFFTSAALRNLCFYSEDSPTEFTSV FT STNTGNLKFGLSYKEQVGSNRELYVGDLNTKLMTRLVEDFSEMITSSMRYSCLNSEKEF FT ERAICDMKMAVNNGDISMSLDHSKWGPHMSPALFYSFLANLNLTEPKSRAKLNLGPLLD FT ILKWHLHKVVEVPFNVAQAYCVGKIKRSLGLMECQTSSVTEQFYHNFLQRENEIPSHIM FT SVLDMGQGILHNLSDLYALITEQFLNYAIYKLYDVDVLSYTSSDDQISIMKLPAYEHID FT EDSPDWLEIVCFHEYLSSKLNKFVSPKSVVGNFVAEFKSRFFVMGEETPLLTKFVAAAL FT HNVRCKTPTQLAETVDTICDQCVANGVSVSIVSKISERVNRLVKYSGFGETPFLSVVKQ FT DVKDWSDGSRGYRLQRNIENSLRDSKILEVMRKGARKVFLGIKNGRIFEENLIGLIGRG FT GDEALRGFLLYAEVDKDEIENALRYRWVNTSTFGDLRLVLRTKIMSSKRVLERESIPSL FT VKTLQSRMSKNFTKGAKKILAESINKSAFQSSVASGFIGFCKSMGSKCVRDGSGGFIYL FT KDIYKKITTCECKHCSVWRGVVYCEKSVEKIFQFTRSIMWDYFTLVLTNACELGEWVFS FT SVKLPTKATILDNPNLFWAIKPRTHKHIEDRLGLNHILHSIKKNYPQLFEEHLAPFMSD FT LQSNQMINPSKIKFLDICVALDMVNENLGIIGHLLRGRNNTIYIVKQSECAGAHVRQAD FT YVDQDLGLSPQQICYNFKVQFLLSSMINPLIVSTSTLRSFFWFNEVLSIEEDDQIELGE FT LTDFTLSIKTYNLERAMTLDDMTMGYVCSTLLDEVVSLESLDSCQDLAALQFKRQDLSD FT FFRDLGEDFVKVGLNIQIVHQRRSTKFDISRKVVYTFRILLLINLSEHLREEVKIPVQS FT LSLYASGAGNNHLFLDGVSMIPTLPLFNGSKSVNLAKVLIEHELATSNDFKLLECVIMD FT FSNFLDELRDKYSYVLVGPEEQENPIVFQNGAFMADNQKLSYMRVEIFGDTIVKALGAL FT ETDREIENLLCNLWPYLKSIKKTIDFNQADFEMIYDLHRTALLKSLCQMDSWIEFTSFS FT VAYSKHLQDLVVSDNLGNLRLKGITCRPFRRDQCIQEIE" XX SQ Sequence 6627 BP; 2108 A; 1063 C; 1445 G; 2011 T; 0 other; 3936460385 CRC32; atggacactt ttttactgga attgaaggat cttgtaagaa agtatgtccc agaattagta 60 gagctatctt tccagaaaga cgcacttctt tcacaggtgc accccagact ggtccttgtt 120 gagggcttca aattgttgtc acttttagtt gaactggagt cttgcaaggt caatgcctgc 180 agacacaact ttgagcaaaa gtttgtggat gtcatcctct ctgatcatgg tgtgatctgt 240 cccactcttc ccaaagtgac gcccgatggt ttcaatctca tgggtaagac tctcatctta 300 ttggaaactt ttgtaagagt caacccaaat gactttgaac ggaagtggaa agctgatatg 360 agcaaactca tgtcattaaa agatgacctt gctagagttg gcatcaccat ggttcctgtt 420 gttgatggaa gaggaagtta caacacaagt tatcttccgg aatgggctac tgagaggttg 480 agatggctat tgattgaaat cttgaaaggg gtgaaagcaa cttcagaaat agaaattgaa 540 gatcaggaat accaaaggct gatacacagt ttggcaaaag ccaataatca aagtatgggg 600 tttgaaaacc tagagtttct aaagagaagg ctgctatcat atgatcaatt gctagacaca 660 tcgttattag tgggtataag aaatgatgtg agagaatcga aaataattga ggaactgatc 720 aaaatcaaac tctggtataa gactgaaatt tttaataaag gtttagggaa atttaaaaga 780 actaataagt ctaatttatt atctgatctt ctgaaaattg gtctgcatca agatagtgat 840 actataaatt gcatgttttg ttcatgcaaa attctggagc tctgttacac actttccaac 900 aaactgtcaa tagatcattc aaaagaagaa atgaaggatg atgaggttgg aggtaagcag 960 ccagtgtgca tttcctattc ttctttatta tcaatttgca ataagattaa aggttcaaaa 1020 atcttcaata ctaggagaaa tacattgctg tttttggacc taatcatgct gaatttcatt 1080 gtggatgaaa tgatacaaga tgactcagtg gtagattctc tcaggggtgc tggttttata 1140 attggtcaaa tggtggtcct ggtcaatgat agagctcttg atatccttgc agcaatgaag 1200 ctgataagac ataaattagg gaatagtaag gactggctgt ccgtgtgtgg gaaagttttg 1260 aaaaggtatg atgaagaaat gtggaaagag gtcaagactt acattaaaga acctgacttc 1320 gacatgctct tccaattggc aaagagttta gtttctgaaa gacccataat gcgttatact 1380 gtccataagg acaacgaaag ccgatgtctc catcaaaact cgttgaatat ctctgaccaa 1440 agtttcaaag ccatgctcaa agctttgtca catgtttcac tctctctgat caattccatg 1500 aaaacatctt tttcctctag acttttaatt aatgaaaagg actattctcg ctattatgga 1560 aatgtcaggc tcaaggaatg ttatgttcag aggttcccca tctcaagtag agtcacaggc 1620 tacctatttt atcaaaagac gggtgagaga tcaaggtgtt attctcttta tatctctgaa 1680 aacggtgaat taagtgagct aggatccttt tattgtgatc caaagagatt ctttttgcct 1740 gttttttctg aagacactat agtgtccatg tgcaatgaaa tggtatgctg gttggacttt 1800 gatgaacaac ttgttgagct ggttaagcct aagctgagat ccttggtgct gctccttctc 1860 tgctcacctt caaaaaggaa ccaaacattt atccaagggc tgagatattt tataatggct 1920 tacgctaatc aggctcatca cgttgatctt atgtcaaaat tagagattga gtgtaagtcc 1980 agttcagaga ttcaattgca aaggttagca gtgacactgt ttgaattggt cttatcaaca 2040 ggggatgata aagattttgg ctttgccaga aggtttaagt ttttactgaa tattagttat 2100 ctgtgtcatt ttgtgacaaa ggagacacca gatagattaa ctgatcagat caagtgtttt 2160 gagaaattcc ttgagccaaa gctgaatttt aacagtgtca tagttaatcc ttctttaagc 2220 gggattttaa cagaagccca agaagagatt atgacatcta gcgttaacag gtttttccag 2280 aaaaatttga ctaacatatc agatgttaaa gaaccgggag tctctaagga attaatcagt 2340 ttctgtgttt ccctttttaa caggggaaag ttaagggtgt ctggtgatct aaaagttgac 2400 ccttttcgcc catcattcac tagtactgct ttggacttat ctagtaataa aagtgttgtt 2460 gtccctaagt tagatgagtt gggtaatgcc ttaagcaagt atgacaaaca aatgatgatc 2520 tcatcttgtg taacaactct tactgaaatg ttcaaaacga agggaaggta caacttggac 2580 ccagattcct tagatttctt ggtcctcaag aacctttcca atttagttag tgtgagtgtt 2640 tcaaaaggtc aaatgaaaga agagctatcc ttgttgtatg acacattatc agaagaacaa 2700 ttggaatcat ttgagcagat caagcaagat gttcagctta ctttaagtag aatgaaagaa 2760 tcaaagtgta ataatgtagg tttaggaaat tctaggaaag tcaataagca ccttagcaaa 2820 agtgagctgc tggaaacact ctggtcacct taccaggttc ttagggctat taaaaatgag 2880 gtttcaattc atgagattaa agactttgat cctgatatta ttgaacacga aactgtaaaa 2940 aagttgtgtg acgaggtgta tcagtccagt aacaagttag aattcttctt agaggaacct 3000 ttgaaatctg tcccacttga atttttgtta aaaaatctaa caactattgc ttatgaggaa 3060 actgactact tagagtgttt caagtatttg ctgatacaag ggggttttga tcaaaaatta 3120 ggtagctatg agcacaaaag taggtctaga ttaggtttga gttcagaagc acttagagtg 3180 caggaagatg cccgagtgag cacaagagaa agcaatgcag aggccatagc caaaaagctt 3240 gacaaaacgt tttttacaag tgcagctcta agaaacctct gtttttactc agaagattca 3300 ccgacagagt tcacaagcgt aagcacaaat acaggaaatc taaaatttgg attaagttat 3360 aaggagcaag ttggatctaa cagggagctt tatgttggtg acttgaatac aaaattaatg 3420 actagattag tagaggattt ttctgaaatg atcacatcat ctatgagata ttcgtgttta 3480 aattcagaga aagagtttga gagggccatc tgtgacatga agatggctgt gaacaatggt 3540 gatattagta tgtcattgga tcattcaaaa tggggccccc acatgagccc tgcattattt 3600 tattcctttt tagccaatct caatttgaca gaacccaaaa gtagagctaa gttgaatctt 3660 ggaccactat tggacatcct taaatggcat cttcataaag ttgtcgaggt accatttaat 3720 gttgctcagg catattgtgt ggggaaaatc aaaagaagtc ttgggctcat ggaatgtcaa 3780 acatcaagtg taacagaaca gttctaccac aacttcttac aaagggaaaa tgaaattcca 3840 agtcacatta tgtctgtatt agatatggga caaggaattt tacacaactt atctgactta 3900 tatgctttaa taacggaaca gtttctcaac tatgcaattt acaaactgta tgatgtggat 3960 gtgttatctt acacttccag tgatgatcag atatctataa tgaaattgcc tgcatatgag 4020 cacatagacg aggatagccc tgactggttg gaaattgtat gttttcatga atatctatca 4080 tcaaagttga acaaatttgt cagtcccaaa agtgttgttg ggaactttgt ggcggagttc 4140 aagtcgaggt tctttgttat gggggaagaa actccattgt taactaagtt tgttgcagct 4200 gctcttcaca atgtcaggtg caaaacaccc acacagctgg cagaaactgt agataccatt 4260 tgtgaccaat gtgtcgcaaa tggtgttagt gtttccatcg tttctaaaat ttcagagaga 4320 gtcaatcggt tagttaagta ttcaggcttt ggagaaacac cattcctttc ggtggtgaaa 4380 caagatgtaa aagattggtc tgatggttct agaggctatc gtttgcagag gaatatagag 4440 aactccctca gagattctaa aattttagaa gtgatgagaa aaggtgctag gaaagtgttt 4500 ctaggaataa aaaatggacg tatctttgaa gagaacttaa ttggcttgat aggtagggga 4560 ggtgatgagg ccttgcgagg ttttctttta tatgctgaag tggataagga tgagattgag 4620 aacgcattga gatacagatg ggtgaacaca tcaacatttg gtgatctgag gttagtctta 4680 aggaccaaga taatgtcaag taaaagagtt ttagagaggg aaagcatccc gagtctagtg 4740 aagactttac aatcaagaat gtcaaaaaac tttacgaaag gggcaaagaa gatattagcg 4800 gagtctataa ataaatctgc ttttcaatca tcagtggcct cagggtttat aggattctgc 4860 aagagtatgg gaagcaagtg tgtaagggat ggaagtggtg gtttcatcta cttgaaagac 4920 atttacaaga agatcactac gtgcgaatgt aaacattgtt cagtgtggag gggtgttgtg 4980 tactgtgaga aatcagtgga aaagatcttc cagtttacaa ggtcaattat gtgggattat 5040 ttcacacttg ttttaaccaa tgcctgtgag ttgggtgaat gggttttctc aagcgtaaaa 5100 cttccaacta aggctaccat tttggataac cccaatcttt tctgggcaat aaaacccaga 5160 acacacaaac acatagagga taggcttggt ttgaatcata tactacattc gataaagaag 5220 aattatcctc aattgtttga ggaacatctg gctccattta tgagtgatct tcaatcaaat 5280 cagatgataa atccatcgaa gataaagttt cttgacattt gtgtggcatt ggatatggta 5340 aatgagaact tggggataat tggtcacctc ctgagaggga gaaataacac catatacatt 5400 gttaaacaaa gtgagtgtgc tggtgctcat gtacgacaag ctgattatgt tgaccaagat 5460 ctgggtttaa gcccacagca aatttgttac aattttaagg tccaattttt gctttcctca 5520 atgattaacc ctctcattgt gtccacttca actttgaggt ctttcttttg gtttaatgag 5580 gttttaagca ttgaggaaga tgatcaaata gaattggggg aactcacaga cttcacactc 5640 tctattaaga catacaatct tgagagggcc atgactttgg atgacatgac aatgggctat 5700 gtttgttcaa ctttattaga cgaagtagtc agcttagaat cccttgattc ttgtcaagat 5760 ttggcagcac tacagtttaa gaggcaggat ttgtctgatt ttttcaggga tcttggagaa 5820 gactttgtta aagtggggtt aaacattcag atcgttcatc agaggagatc aacaaagttt 5880 gacatttcaa gaaaagttgt gtacactttt aggattctgc ttttaataaa tctgagtgaa 5940 catttaagag aagaggtaaa aattccagta caatctttga gtttgtatgc ctctggtgcc 6000 ggaaacaacc acctttttct agatggtgtc tcaatgatac ctacactgcc tctctttaat 6060 ggatcaaaga gtgtgaattt agcaaaagtt ttaatagaac atgagttggc aacatccaat 6120 gattttaaat tgttagaatg cgtgatcatg gacttctcaa actttttgga tgaactgagg 6180 gacaaatact cttacgttct agttgggccg gaagaacagg aaaaccccat tgtgttccaa 6240 aatggtgcct tcatggctga taatcagaag ctatcataca tgagggtgga gatttttggt 6300 gataccattg tgaaagctct tggagcactg gagacagaca gagaaattga aaacttgcta 6360 tgcaatctct ggccatattt gaaatccata aagaaaacaa ttgattttaa tcaagcagac 6420 tttgagatga tttatgattt gcatagaact gctttgttaa agtctctatg ccaaatggat 6480 agttggatag agtttactag tttcagtgta gcttatagta agcacctaca ggatttggtt 6540 gtcagtgaca acctaggtaa cctaaggttg aaaggcatca cctgtcggcc cttcagaaga 6600 gaccaatgta ttcaggagat cgagtaa 6627 // |
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