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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   ABV93735; SV 1; linear; genomic DNA; STD; PRO; 1305 BP.
XX
PA   CP000830.1
XX
DE   Dinoroseobacter shibae DFL 12 xylose isomerase
XX
OS   Dinoroseobacter shibae DFL 12
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
OC   Rhodobacteraceae; Dinoroseobacter.
OX   NCBI_TaxID=398580;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1305
FT                   /organism="Dinoroseobacter shibae DFL 12"
FT                   /strain="DFL 12"
FT                   /mol_type="genomic DNA"
FT   CDS             complement(CP000830.1:2114512..2115816)
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /gene="xylA"
FT                   /locus_tag="Dshi_1996"
FT                   /product="xylose isomerase"
FT                   /EC_number="5.3.1.5"
FT                   /note="PROSITE: PS00172, PS00173; PFAM: PF01261; SWISSPROT
FT                   Q3IYM4: Xylose isomerase; TIGRFAM: TIGR02630; COG: COG2115"
FT                   /db_xref="GOA:A8LP53"
FT                   /db_xref="InterPro:IPR018115"
FT                   /db_xref="UniProtKB/Swiss-Prot:A8LP53"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="ABV93735.1"
FT                   /translation="MSDFFAGIPAVTYEGPEARSDFAFRHYNPDEMVMGKRMEDQLRFA
FT                   VAWWHSFAWEGGDPFGGPTFQRPWFGDTLDHARAKADAAFEMFRILNVPFYCFHDADIR
FT                   PEGASFAETTANLEAMVDYLGQKQEASGKRLLWGTANLFSHRRYMAGAATNPDPDVFAY
FT                   AAATIKTCMDATHKLGGANYVLWGGREGYETLLNTDLGREREQAGRMLQMVVDYKHKIG
FT                   FEGTILLEPKPQEPTKHQYDYDVATVFSFLSEFGLQDEVKMNIEQGHAILAGHSFEHEL
FT                   ALAREFGILGSIDMNRNDYQSGWDTDQFPNNIPEVALAYYEILRAGGFDTGGTNFDSKL
FT                   RRQSLDPADLIAAHVAAMDVCAAGLKAAARMLEDGELEQRREDRYAGWRAPSAEAMLNG
FT                   GKLEDCFAHVMETGLDPQPVSGGQERLEALVARYL"
XX
SQ   Sequence 1305 BP; 233 A; 389 C; 462 G; 221 T; 0 other; 3092525809 CRC32;
     atgagcgatt ttttcgcggg gatccccgcc gtcacctatg aaggccccga ggcccgcagc        60
     gacttcgcct tccggcacta caaccccgac gagatggtca tgggcaagcg gatggaggat       120
     cagctgcgct tcgccgtggc ctggtggcat tcctttgctt gggaaggggg cgacccgttc       180
     ggcggtccga ccttccagcg cccgtggttc ggcgacaccc tggatcatgc ccgcgccaag       240
     gccgatgcgg cgttcgagat gttccgcatc ctgaacgtgc cgttctattg cttccacgac       300
     gccgatatcc gccccgaggg cgcgagtttc gccgagacca ccgcgaacct tgaagcgatg       360
     gtggactacc tgggccagaa gcaggaggcg agcggcaagc ggctgctctg gggcaccgcg       420
     aacctgttct cgcaccggcg ctacatggct ggggcggcga cgaacccgga cccggatgtg       480
     ttcgcctatg ccgccgccac catcaagacc tgcatggacg cgacccacaa actgggcggc       540
     gcgaattatg tcctgtgggg cgggcgcgag gggtacgaga ccctgctcaa caccgatctg       600
     gggcgcgagc gggagcaggc gggccggatg ctgcagatgg ttgtggatta caagcacaag       660
     atcgggttcg agggcacgat cctgctggag ccgaaaccgc aggagcccac gaagcaccaa       720
     tatgattacg acgtggccac ggtgttcagc tttctgtcgg agttcggcct gcaggacgag       780
     gtgaagatga atatcgagca gggccatgcg atcctggccg ggcattcctt cgagcatgag       840
     ctggcgctgg cgcgggagtt cgggatcctg ggctccatcg acatgaaccg caacgattac       900
     cagtcgggct gggacaccga ccagttcccg aacaacatcc ccgaggtggc gctggcctat       960
     tacgagatcc tgcgcgcggg cggcttcgat accgggggca ccaatttcga ttccaagctg      1020
     cggcggcaat cgctggaccc ggcggacctg atcgcggccc atgtggcggc gatggatgtc      1080
     tgtgccgcgg ggctgaaggc ggcggcacgg atgctggagg atggcgagtt ggagcagcgg      1140
     cgcgaggatc gctatgcggg ctggcgcgcg ccctcggcgg aagcgatgct gaacggtggc      1200
     aagctggagg actgctttgc ccatgtgatg gagaccgggc ttgatccgca gccggtctcg      1260
     ggcgggcagg aacggctgga ggcgctggtc gcgcgatacc tgtaa                      1305
//
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