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EBI DbfetchID AAX99344; SV 1; linear; genomic RNA; STD; VRL; 6651 BP. XX PA AY924390.1 XX DE Bear Canyon virus RNA-dependent RNA polymerase XX OS Bear Canyon virus OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus; OC New world arenaviruses. OX NCBI_TaxID=192848; XX FH Key Location/Qualifiers FH FT source 1..6651 FT /organism="Bear Canyon virus" FT /segment="L" FT /host="Peromyscus californicus" FT /strain="AV A0070039" FT /mol_type="genomic RNA" FT /country="USA:southern California" FT CDS complement(AY924390.1:422..7072) FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="RdRp" FT /db_xref="GOA:A0PJ24" FT /db_xref="InterPro:IPR010453" FT /db_xref="UniProtKB/Swiss-Prot:A0PJ24" FT /func_characterised="identical sequence" FT /protein_id="AAX99344.1" FT /translation="MSEYLDELKELIRKWIPDEEMYIEQKTSFLSQVNLRSVVIEGLKL FT LSIIIEIDSCKKHGCVHNKNKTVNQILRDHRIVGPTLPDVVPDGYRVIGSTIILLEAFV FT RVSHESFEIKYKSDFEKLMQLSKDLSRCGLTLIPVVDGRSNYYTEHFPDWTIERMRWLI FT LKITNFLRDNGEEIEELEYSRLVYSLSNMENKNLGLESLKILKEEGLDYKAKLMSVMRD FT GVNSNMSASECRVEMAKIYDQFSFLRKNGLYKDVYCKTSRTEIINWLKDHKLILLSGET FT RTAMLDERQCGYCRNHMFRILASLIKNKRHYQSLTNPKKCGSIQSHKKLLSDCNKIKGL FT KVLNTRRFTLLCLDVIILNSLLELIDAGEIDNEFLVNNHFKSVNDRLVSIDLIIDRLNK FT KLMSKPNWIGSVKYKMKRTLEIHGLYYVSKWLKQVDIDSWYEFKMMREHSDKCVKPTLK FT YKKDAARKCGQPEFGSSTILDDEVFLEYLEALSTLSLGLVNSMKTSSAAKFLINDKSNY FT FGTVQCNECYFQDLDKSYNSLLIYQKTGERSRCYGLMFKSEQFENVYEVGESFYADPKR FT FFLPIMSSEVILKMCVEMLSWLDWLSEQELKAFKSKLYTLIINILTVPSKRVQVYLQGF FT RYLIMAFVNELHFKELQNKLKVQPLTISECYVFTLMDDLVHLLLTEAQEENMSKVFRFV FT LNLSYLCHLVTKETPDRLTDQIKCFEKFLEPKVDFNSVFVNLDSSPHLSGEVEEKFIKD FT LNRLFSKDLGVEDLKDPGISKELISLCASCFNCGLLPMSKVLKHDPQSPSFTSTALDIS FT SNKSVVVPKLDEVGETVTQYDYQSLLSSTVVDMAQSFKDKLKYKLDRKSIQFAIFKRLT FT NMVLKRKTDHDVKDDLDDELSEIVDDDTLRVINDVEANVSECLSKMGKISRAATVGGQN FT NLGRFEKIDTLKRLWDRESMNFILMETSLHEVKDFDPSIFPIEKYKSMCELVYDSKMKS FT EFFTDEVLKFCPLDLLVKNLATKCYLEEDFFECFKYILISAGFDNRVGRYDHRSRSRLG FT FKDEAILIKENSRISSRESNSEAISRRLDKSFFTNSSLRNLCFYSEESPTYRSTVSSSV FT GKLKFGLSYKEQVGSNRELYVGDLNTKLTSRLIEDYFESLTSECKFSCLNNDAEFERAL FT LDMKCVVRLSGLAVSMDHSKWGPYMSPAIFNILFSNLNLELNDGVFIDKAPIENLLNWH FT LHKIVEVPYNVIDAYLKGYTKRRLGLMDRSSTSITEDFIFNWFAKGVVPSHISSVLDMG FT QGILHNTSDYYGLLTEQFILQCLDFIFDIKSTAYTSSDDEILLSNSPSLKKVDEDSLDI FT NKCQEVLEFHNYLSSKFNKFVSPKTVAGSFASEFKSRFFIWSQEVPLLTKFVAAALHNV FT KAKSPHQLAETVDTILDQCIANGVSIEVVKAISRRTNKLITYSGHPKNPFLCVENTDLK FT DWVDGSRGYRLQRSVESLFNDDDLPLTIRNSCRSLFHRIRSGDIQEEFLINALQTSPDE FT CLAKMLRLSDVDESTIDKVLEFRWLNLRAHGDLRLVLRTKVMSGTRILDREEVPSLVKS FT VQSKLSKNFVRGAKKIITDAINKSAFQSSICSGFIGFCKSMGSKCVRDGNGSFQYIKHF FT LKSIILHSHCEVCKPEMSVFCRAALEELKPFSRPIFWDYFSLTFSNACELGNWVFSNVT FT IPKRTPTTVNPNFFWPVKPGSHTELEDKVNMNHVLYSIKRNFPDLFDEHIAPFLSDLNS FT LKISWIQRIKFLDLCVAMDMSSECLGIISHIMRRKREELYIVKQNELSVAHMRDSSPME FT AGYQLNSSEICHNFLCQLVFESMLHPVLLTTGQFKKYFWFGEVELLPNEADHDLGQLTQ FT FVMDCKTLNISRCMSLDDLDVGYVHSSILMGDIYVNFSSFLHLLDWENRRNYKTFDEII FT LCSREDTIPMEIDFTISHSRKSFKFKYERKTNYHIKSKVLVQKVDIEEAQNQGFDILEL FT EVHEIECFVSGSQGNHISLDGVGLIPLHPLFSGKEFLDVNKLLIKQDENFESTHSVFSK FT VKLNFSNHTKDLKNKYSYKLQGPEYNMNPLHLYRGQIMENNFVISRLDVQITSRSVFLA FT LEALESEDRIPFLISLHIYTRSNNKKENSCFIRMTQSDLCLLIDSYEKEFTEVLKSLSD FT WMDFGDFALCFSNNLNCIMIADPDGQFKLKGRQCRKVSSASAPLEID" XX SQ Sequence 6651 BP; 2190 A; 1078 C; 1360 G; 2023 T; 0 other; 3004866565 CRC32; atgagtgaat accttgatga attgaaggaa ctcattagga aatggatacc tgacgaagag 60 atgtatatag aacagaagac cagtttcttg tctcaagtca atctcagatc agtagtcatt 120 gaaggcctaa aattattgtc aattattata gagatagatt cctgcaagaa gcatggatgc 180 gtgcacaaca agaacaaaac agtgaatcag atcttgagag atcataggat tgtgggacct 240 actctacccg atgttgtgcc tgatggttac agagtgattg gatcaacgat aatcttgttg 300 gaggcttttg ttagggtaag tcatgaatcc tttgagatca agtacaaatc agattttgag 360 aagttgatgc agttatctaa agaccttagt agatgtggtc taacactcat ccctgttgta 420 gatggtagat caaattatta tacagaacac tttccagatt ggacaataga gagaatgaga 480 tggttgatac tgaaaataac taacttccta agagacaacg gggaagagat tgaggaacta 540 gaatactcta gacttgtgta cagtctctca aatatggaaa ataaaaactt gggccttgag 600 tctctgaaga tattgaaaga agaaggctta gattacaaag caaaattgat gtcagtgatg 660 agagatggtg tcaactccaa catgtcggcc tctgaatgca gagttgaaat ggccaaaatt 720 tatgatcaat tttctttctt gagaaaaaat ggattatata aagatgtgta ttgtaagaca 780 tcacgaacag aaattatcaa ctggttgaag gatcataaat taatcctgct tagtggtgag 840 accaggactg ccatgctgga cgagaggcag tgcggttact gtagaaacca catgtttaga 900 atattggcaa gtctgatcaa gaataaaaga cactaccaaa gtctcaccaa ccctaaaaaa 960 tgtggcagta tacaaagtca taagaaacta ctttctgatt gcaacaagat taaaggttta 1020 aaagtactaa atactcgaag atttacactc ctatgccttg atgtcatcat tcttaacagt 1080 ctactcgaat tgatagatgc aggggaaatt gataatgagt tcttggttaa caaccatttt 1140 aaaagtgtga atgatagact ggtgtcaatt gatttgataa tagacagatt gaataaaaaa 1200 ctaatgagta agccaaactg gattggtagt gtcaaataca aaatgaagag gacacttgag 1260 atacatgggc tgtactatgt atctaaatgg cttaaacagg ttgatattga ttcttggtat 1320 gagtttaaga tgatgcgaga gcactcagat aaatgtgtaa agccaacctt gaaatacaaa 1380 aaagatgctg caagaaaatg tggtcaacct gaatttggta gtagcacaat tttagatgat 1440 gaagttttcc ttgagtatct tgaggcgcta tcaaccttga gtcttggttt agtcaactca 1500 atgaaaacaa gttcagctgc aaaatttcta atcaatgata agagcaatta ctttggtaca 1560 gttcaatgca atgagtgtta ttttcaagat cttgataaaa gttataatag tttgctaatt 1620 tatcagaaaa ctggtgaacg gtcaaggtgt tacgggctga tgttcaagag tgaacaattt 1680 gagaatgtat atgaggttgg tgaaagcttt tatgcagatc ctaaaagatt tttcttgccc 1740 ataatgagtt cagaagtcat cttaaagatg tgtgttgaga tgttatcatg gctagactgg 1800 ctgagtgagc aagagttgaa ggcttttaag tcaaaactct acactctaat aattaatata 1860 ctaactgttc caagtaagcg agttcaggtt tacctgcagg ggtttagata cttaataatg 1920 gcgtttgtta atgaactaca ctttaaggaa ttacaaaata agctaaaggt ccaacctttg 1980 acaatttcag agtgttatgt gtttacacta atggatgatt tagttcatct cttattaaca 2040 gaagcccaag aggaaaacat gtctaaggtg tttagatttg ttttaaactt gtcatattta 2100 tgccatctag ttacaaaaga aaccccagat cgtttgactg atcaaatcaa atgttttgag 2160 aagtttttag agccaaaagt tgacttcaat tctgtttttg ttaatttgga ttcatcacca 2220 cacctgtcag gagaggtgga agaaaagttt atcaaggatc tcaatagact tttctccaaa 2280 gatttgggtg ttgaggattt gaaagaccct ggaatttcaa aagaactgat ttcattatgt 2340 gcatcatgct tcaactgtgg tttgctgcca atgagcaaag tccttaaaca tgacccacag 2400 tcaccatcat tcactagtac agccttggat atttctagta acaaaagtgt tgtcgttccg 2460 aagttagatg aagtaggtga aacagtaaca caatatgatt accaatcatt actgtcttcc 2520 actgttgttg atatggctca gtcctttaaa gacaaactga agtataaact tgatagaaaa 2580 agtatccaat ttgcaatttt caaacgctta acaaacatgg tcttaaagag gaagacagat 2640 catgatgtaa aagatgatct tgatgatgaa ctgtcagaaa ttgtagatga tgatacactt 2700 agagtcataa atgatgtaga agctaatgtc tctgaatgtc taagcaagat ggggaagatc 2760 tccagagctg ccactgtggg tggtcagaac aatctaggta ggtttgaaaa aattgataca 2820 ttgaagagac tatgggatag agaatcaatg aactttattt tgatggaaac ttccctacat 2880 gaggtcaagg attttgaccc ctcaatattc cccattgaga aatacaaatc aatgtgcgag 2940 ttagtttatg atagtaaaat gaaatctgaa ttttttaccg atgaagtttt gaagttttgt 3000 ccactggatt tgctggtgaa gaatttggcc acaaaatgct atttggagga agattttttt 3060 gaatgcttta aatatatcct cataagtgct ggttttgata atagagttgg taggtatgat 3120 cacagaagta gatctagatt aggatttaaa gatgaggcaa tattaattaa agagaactcc 3180 agaattagtt caagggaaag taactcagaa gcaatttcta gaagacttga taagagtttt 3240 tttaccaatt cttccttgag gaacttgtgt ttctattctg aagagtcccc aacttataga 3300 tccactgtgt catccagtgt tgggaaactg aaatttggtc tttcttacaa agaacaggtt 3360 ggaagcaata gagaacttta tgttggggat ctaaacacaa agcttactag tagactgatt 3420 gaagattact ttgaatcctt aacctcagag tgtaagttct cctgtcttaa taatgatgca 3480 gaatttgaaa gggctctttt agatatgaag tgtgtcgtaa ggctttcagg tctagcagtg 3540 agcatggatc attccaagtg ggggccatat atgtcacctg caatcttcaa catacttttt 3600 agtaatctga accttgagtt aaatgacggg gtgtttattg acaaagctcc tattgagaac 3660 cttttgaatt ggcacttaca taagattgtt gaggtacctt ataatgtgat tgatgcttat 3720 ttgaaaggtt acacaaagag aaggcttggc ttaatggaca ggtcaagtac atccatcaca 3780 gaagacttca tttttaactg gtttgcaaaa ggggttgttc cttcgcacat ttcttctgtt 3840 ctggacatgg gacagggaat tttgcataat acctcagatt attatggtct gctcacagaa 3900 cagttcatct tgcagtgtct ggattttatc tttgacatca agtcaacagc ttacacatca 3960 agtgatgatg agatcctctt aagtaattct ccttccttaa agaaagttga tgaagactca 4020 ctagatataa acaaatgcca agaagtactt gaattccata attacttgtc atctaaattc 4080 aacaaatttg taagccccaa aacagtggca ggctcctttg caagtgagtt taaatctaga 4140 ttctttatct ggtctcagga agttccactg ctcacaaagt ttgtagcagc agcacttcat 4200 aatgtaaaag caaaatctcc acatcagttg gctgaaacag tagatacaat tttggatcag 4260 tgtatagcaa acggtgtgtc aattgaagtg gttaaagcaa tttcaagaag gactaacaaa 4320 cttatcacct atagtggaca tcctaaaaat ccctttcttt gtgttgaaaa tacagacctg 4380 aaagattggg tggatggttc aaggggttac cgtcttcaga ggtcagtgga gtcactgttt 4440 aatgatgatg acctcccatt gacaatcaga aactcatgta gaagtttgtt tcatagaatc 4500 agatcaggtg atatacaaga agagtttcta atcaatgcat tgcaaacctc acctgatgaa 4560 tgtctagcaa aaatgttgag gttgagtgat gttgatgaaa gtacaattga taaggtgctt 4620 gagttcagat ggttgaactt aagagctcat ggtgacttaa gattggtctt gaggactaag 4680 gtcatgtcag gcacaagaat tttagatagg gaagaagtgc cctcactggt taaatcggta 4740 cagtctaagc tttcaaaaaa ctttgtcaga ggggcaaaga agataatcac tgatgctatt 4800 aataaatcag cctttcagag tagtatttgc tccggcttca taggattttg taagagtatg 4860 ggttctaaat gtgttagaga tggaaacggt agttttcagt acataaaaca ttttttgaaa 4920 tctatcatct tgcattcgca ttgtgaagtc tgcaaaccag agatgagtgt cttttgtcga 4980 gcagcactag aggagcttaa acccttctca agacccatct tttgggatta tttttctttg 5040 actttttcaa atgcctgtga attgggaaat tgggtttttt cgaatgtgac cattcctaaa 5100 agaactccaa caacagtaaa tcccaacttc ttttggcctg taaaaccagg gagccacact 5160 gaattagagg acaaagtaaa catgaatcat gtgctctact caatcaaaag aaattttcct 5220 gacctttttg atgagcacat tgctccattc ttatcagacc ttaactctct gaaaatttcc 5280 tggatacaga gaataaagtt cttggattta tgtgttgcca tggatatgtc aagtgagtgt 5340 ttaggtatta tttcgcacat aatgagaagg aagagggaag aattatacat tgtgaagcaa 5400 aatgaactgt ctgttgcaca catgagggat tcctcaccaa tggaagcagg gtatcaatta 5460 aactcatctg aaatttgtca taattttctc tgtcagttag tttttgaatc tatgcttcat 5520 cctgttttat taaccacagg tcaatttaaa aagtacttct ggttcggtga agtagaactc 5580 ctgcctaatg aagcagatca tgacctgggg cagttaactc aatttgtaat ggattgcaaa 5640 acactcaaca tctccagatg catgtccctc gatgatttag atgttggata tgtgcatagc 5700 tcaattctaa tgggtgacat ttatgtgaac ttttctagtt tcttacactt actggattgg 5760 gaaaataggc gtaattataa gacttttgat gagatcattt tgtgctcaag agaggacacc 5820 attccaatgg aaattgactt cactataagc cattcaagga agagtttcaa atttaaatat 5880 gaaagaaaaa ctaactatca cattaaaagc aaggttctgg ttcagaaggt cgacatagaa 5940 gaggcacaaa atcaggggtt tgacatactt gaacttgaag tacatgaaat tgaatgtttt 6000 gttagtggat ctcaagggaa ccacatcagt cttgatggag tgggtctcat tccactacac 6060 cctcttttta gtggcaagga attccttgat gttaacaaac tcctcataaa gcaggatgaa 6120 aattttgaat ccacccattc cgtcttttcc aaggtcaaac tgaacttcag taaccacaca 6180 aaagatctga aaaataagta ctcctataaa ttacagggac ctgaatacaa tatgaaccct 6240 ttgcaccttt acagagggca aattatggaa aacaactttg taatttcaag gcttgatgtt 6300 cagataactt ccagatcagt cttccttgct ttggaagcac tggaaagtga agacaggatt 6360 cctttcctga tttctttaca tatctacaca agatcaaata acaagaaaga aaattcttgt 6420 tttataagga tgacacaatc tgatctctgt ctattgattg attcctacga aaaggagttc 6480 actgaagtac taaaatccct atcggattgg atggactttg gtgactttgc tctatgcttc 6540 agcaacaact taaattgcat catgattgca gacccagatg ggcaattcaa actcaaaggt 6600 agacagtgta gaaaggtctc atcagcatca gcacccctcg aaattgacta a 6651 // |
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