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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AAV91509; SV 1; linear; mRNA; STD; PLN; 1767 BP.
XX
PA   AY830949.1
XX
DE   Arabidopsis thaliana (thale cress) VGD1-like protein 1
XX
OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
OX   NCBI_TaxID=3702;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1767
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="2"
FT                   /map="At2g47030"
FT                   /mol_type="mRNA"
FT   CDS             AY830949.1:93..1859
FT                   /codon_start=1
FT                   /gene="VGDH1"
FT                   /product="VGD1-like protein 1"
FT                   /note="tube-specific pectin methylesterase; role in
FT                   modification of cell wall pectin; expressed specifically in
FT                   pollen and pollen tube"
FT                   /db_xref="GOA:O80722"
FT                   /db_xref="HSSP:1GQ8"
FT                   /db_xref="InterPro:IPR006501"
FT                   /db_xref="UniProtKB/Swiss-Prot:O80722"
FT                   /func_characterised="similar sequence"
FT                   /protein_id="AAV91509.1"
FT                   /translation="MIGKVVVSVASILLIVGVAIGVVAFINKNGDANLSPQMKAVQGIC
FT                   RSTSDKASCVKTLEPVKSEDPNKLIKAFMLATKDELTKSSNFTGQTEVNMGSSISPNNK
FT                   AVLDYCKRVFMYALEDLATIIEEMGEDLSQIGSKIDQLKQWLIGVYNYQTDCLDDIEED
FT                   DLRKAIGEGIANSKILTTNAIDIFHTVVSAMAKINNKVDDLKNMTGGIPTPGAPPVVDE
FT                   SPVADPDGPARRLLEDIDETGIPTWVSGADRKLMAKAGRGRRGGRGGGARVRANFVVAK
FT                   DGSGQFKTVQQAVDACPENNRGRCIIYIKAGLYREQVIIPKKNNNIFMFGDGARKTVIS
FT                   YNRSVALSRGTTTSLSATVQVESEGFMAKWMGFKNTAGPMGHQAAAIRVNGDRAVIFNC
FT                   RFDGYQDTLYVNNGRQFYRNCVVSGTVDFIFGKSATVIQNTLIVVRKGSKGQYNTVTAD
FT                   GNELGLGMKIGIVLQNCRIVPDRKLTPERLTVATYLGRPWKKFSTTVIMSTEMGDLIRP
FT                   EGWKIWDGESFHKSCRYVEYNNRGPGAFANRRANWAKVARSAAEVSGFTAANWLGPINW
FT                   IQEANVPVTIGL"
XX
SQ   Sequence 1767 BP; 511 A; 408 C; 453 G; 395 T; 0 other; 3823278310 CRC32;
     atgattggaa aagttgtggt ctcggtggcc tccatcctct taatagtcgg agttgccata        60
     ggagtcgttg ccttcataaa caaaaatggc gatgctaatc tgtctcccca aatgaaagcg       120
     gttcaaggaa tttgccggtc gacatccgac aaagcctcat gtgtcaaaac tctcgagccg       180
     gtcaagagcg aggacccaaa caagctgatc aaggctttca tgctcgctac aaaagacgaa       240
     ttaaccaaat cgtctaactt cacgggtcaa accgaagtaa acatgggctc gagcatctcg       300
     ccaaacaaca aagccgttct tgattactgc aagagagttt tcatgtacgc tcttgaggat       360
     ctcgctacca ttattgaaga aatgggtgaa gatcttagcc agatcgggag caaaatcgac       420
     cagctcaaac aatggttaat cggtgtttac aattaccaaa ctgattgtct tgacgatatc       480
     gaagaagatg atttaagaaa ggcgattggt gagggcattg caaactccaa gattctcact       540
     accaacgcta ttgacatctt ccacactgtc gttagcgcca tggccaagat taacaacaag       600
     gttgacgact tgaagaacat gacaggcgga atccccactc ccggagcccc tcctgttgtt       660
     gatgaatctc ccgtggccga cccagatggt cctgctcgtc gtcttcttga agacattgac       720
     gagaccggaa tcccaacatg ggtttcaggt gctgacagga agctcatggc taaggctgga       780
     cgtggccgta gaggcggccg cggaggcggt gctagggtca gagcgaactt tgtggtggct       840
     aaggatggaa gcggacagtt taagacggtt caacaagccg ttgatgcttg tcctgagaat       900
     aaccgaggcc gatgcatcat ctacatcaag gccggtctct acagagagca agtaatcatc       960
     cctaagaaga acaacaacat cttcatgttt ggagatggtg caagaaagac cgtcatttct      1020
     tacaacagaa gtgttgctct cagccgtgga accaccacat ccctcagtgc cacagttcag      1080
     gttgaatcgg aaggattcat ggcgaaatgg atgggattca agaacaccgc cggtccaatg      1140
     ggacaccaag ccgcggctat ccgagtgaac ggagaccgtg ccgtgatctt caactgcaga      1200
     ttcgacggtt atcaagacac attgtacgtt aacaacggtc gtcagttcta cagaaactgt      1260
     gtggtctcgg gaacagtaga cttcatcttc ggcaaatccg caaccgtgat ccaaaacaca      1320
     ctaattgttg tccgtaaagg aagcaaggga caatacaaca cggtcacagc cgatggaaac      1380
     gaattgggct tagggatgaa aattggtatc gtcctccaaa actgccgcat cgtgcccgac      1440
     aggaaactaa cgccagagag acttacggtg gcgacatact tgggaaggcc gtggaagaaa      1500
     ttctcgacca ccgtgataat gagcaccgag atgggagatt tgattagacc agaagggtgg      1560
     aagatttggg atggggaaag tttccacaag tcatgtaggt acgttgagta caacaaccgt      1620
     ggaccaggag cattcgctaa cagaagagct aactgggcta aggttgccag gtctgcagct      1680
     gaggtcagtg gcttcacagc tgctaactgg ttaggtccta ttaattggat tcaagaagcc      1740
     aatgttcctg tcacaattgg attataa                                          1767
//
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