spacer
spacer
EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AAV59405; SV 1; linear; genomic DNA; STD; PLN; 1986 BP.
XX
PA   AC119291.5
XX
DE   Oryza sativa Japonica Group putative beta-galactosidase
XX
OS   Oryza sativa Japonica Group
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade;
OC   Ehrhartoideae; Oryzeae; Oryza.
OX   NCBI_TaxID=39947;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1986
FT                   /organism="Oryza sativa Japonica Group"
FT                   /chromosome="5"
FT                   /cultivar="Nipponbare"
FT                   /mol_type="genomic DNA"
FT                   /clone="OSJNBa0052K01"
FT   CDS             complement(join(AC119291.5:101375..101455,
FT                   AC119291.5:101766..101831,AC119291.5:101927..102072,
FT                   AC119291.5:102657..102849,AC119291.5:102940..102990,
FT                   AC119291.5:103640..103786,AC119291.5:103867..103938,
FT                   AC119291.5:104032..104222,AC119291.5:104314..104362,
FT                   AC119291.5:104454..104549,AC119291.5:104630..104747,
FT                   AC119291.5:104842..104932,AC119291.5:105228..105261,
FT                   AC119291.5:105799..105900,AC119291.5:106033..106107,
FT                   AC119291.5:106215..106303,AC119291.5:106797..106992,
FT                   AC119291.5:107450..107563,AC119291.5:107692..107766))
FT                   /codon_start=1
FT                   /gene="OSJNBa0052K01.15"
FT                   /product="putative beta-galactosidase"
FT                   /note="'similar to rice EST CB628579, AK068572'"
FT                   /db_xref="GOA:Q0DGD7"
FT                   /db_xref="InterPro:IPR001944"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q0DGD7"
FT                   /func_characterised="similar sequence"
FT                   /protein_id="AAV59405.1"
FT                   /translation="MGPSRSFQNLLLLLLPLALALCSAAASGEASRRFWVENDTFWKDG
FT                   APFQIVGGDVHYFRIVPEYWKDRLLRAKALGLNTIQTYVPWNLHEPKPLSWEFKGFTDI
FT                   ESYLRLAHELDMLVMLRVGPYICGEWDLGGFPPWLLTIEPTIELRSSDSTYLSLVDRWW
FT                   GVLLPKIAPLLYSNGGPIIMIENEFGSFGDDKNYLHYLVEVARRYLGNDIMLYTNGTIL
FT                   QDDVFAAVDFDTGSNPWPIFQLQKEYNLPGKSAPLSSEFYTGWLTHWGERIATTDASST
FT                   AKALKRILCRNGSAVLYMAHGGTNFGFYNGANTGQNESDYKADLTSYDYDAPIREYGDV
FT                   HNAKYKALRRVIHECTGIPLLQLPSKIERASYGLVEVQKVASLFDVIHNISDALKVAFS
FT                   EQPLSMELMGQMFGFLLYTSEYQEKHSSSILSIPKVHDRAQVFVSCSHGDVRKPRYVGI
FT                   VERWSSKTLQIPSLSCSSNVSLYILVENMGRVNYGPYIFDQKGILSSVEIDGIILRHWK
FT                   MHPVSLNAVGNLSKLQLIMQMTDAEASKVSIYGDSENKLQDVSLYLNEGISEEPAFYEG
FT                   HFHIDSESEKKDTFISFRGWNKGVAFVNNFNIGRFWPAIGPQCALYVPAPILKPGDNVI
FT                   VIFELHSPNPELTIKLVKDPDFTCGQ"
XX
SQ   Sequence 1986 BP; 565 A; 418 C; 444 G; 559 T; 0 other; 1461929601 CRC32;
     atggggccgt ccagaagctt ccagaacctt cttctcctcc tcctccccct cgcgctggcc        60
     ctgtgctccg ccgcggccag cggggaggct tcgagaaggt tctgggtcga gaacgacacc       120
     ttctggaagg atggcgcccc gttccagatc gtcggcggcg acgttcacta cttccgcatt       180
     gtccctgagt actggaaaga tcgcctttta agggcaaagg cgctgggctt gaacacaatt       240
     cagacatatg ttccttggaa tctgcatgag ccaaaaccgc tgagctggga attcaagggt       300
     ttcacagata ttgaatcata tttaagactt gctcatgaat tagatatgct ggtcatgctt       360
     cgtgtaggtc catatatttg tggagaatgg gacttggggg gatttccacc ttggttactg       420
     accatagaac caaccatcga actgcgttct tcagattcaa cctatctttc cttggtggac       480
     agatggtggg gagtactact cccaaaaatc gcaccactat tatacagcaa tggaggtcct       540
     atcatcatga ttgaaaatga atttggttca tttggagatg acaagaatta tcttcattac       600
     cttgttgaag ttgccagaag atatcttggg aatgacatta tgctgtatac aaatggaaca       660
     attcttcagg atgatgtttt cgctgctgtt gattttgata ctggttccaa tccatggcca       720
     atatttcaac tacagaagga atacaacttg ccaggaaaat cagctccttt aagctcagaa       780
     ttttacactg gatggctaac acactggggg gaaagaattg caacaactga tgctagcagt       840
     acagctaaag ctcttaaaag aattttgtgc cgcaacggtt ctgctgtact ttatatggct       900
     catggtggga ctaattttgg gttttacaat ggtgcaaata ctggtcaaaa tgaatctgac       960
     tacaaggcag acctcacttc atatgactat gatgcaccaa ttagggagta tggggacgtg      1020
     cataatgcaa aatacaaagc actaagaaga gttatacatg aatgcactgg cattcctctt      1080
     ctccaacttc cttccaaaat tgaaagagct agttatgggc ttgtagaagt acagaaggtc      1140
     gcttctttgt ttgatgtcat tcataacatc agtgatgctc tgaaagtggc tttttcagag      1200
     cagcctctat ccatggaact gatgggccag atgtttggtt ttctactgta cacatcagaa      1260
     tatcaagaaa aacattcatc cagcatccta tcaattccaa aggtacatga cagagctcaa      1320
     gtgtttgtgt cctgctcaca cggtgatgtc agaaaaccga gatatgttgg catagttgaa      1380
     agatggtcga gtaaaacact acaaatacca agcttaagct gctcatctaa tgtcagctta      1440
     tatatcctgg tagaaaacat gggtcgagta aattatggac catatatttt tgaccagaag      1500
     ggcatactat cttctgttga aatagatggc attattctcc gtcactggaa aatgcatccg      1560
     gtttcactta atgcggtggg caacctttca aaacttcaac taatcatgca gatgactgat      1620
     gctgaagcta gcaaagtatc catttatggt gattcagaaa ataagttgca ggatgtatcg      1680
     ctctatctaa atgaagggat ttcagaggaa ccggcattct atgaaggcca ttttcatatt      1740
     gactctgaat ctgagaaaaa ggacacattc atatcatttc gaggttggaa taaaggagtc      1800
     gcttttgtga acaacttcaa cattggaagg ttctggccgg ccattggacc acaatgcgct      1860
     ctgtatgttc ctgcgccgat cctcaaacct ggagataatg tcattgtgat ctttgaactg      1920
     catagtccaa accctgagct caccatcaag ttagtgaagg atccagattt cacatgcggc      1980
     cagtga                                                                 1986
//
spacer
spacer