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EBI DbfetchID AAP44538; SV 2; linear; genomic RNA; STD; VRL; 6606 BP. XX PA AY216502.2 XX DE Allpahuayo virus L protein XX OS Allpahuayo virus OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus; OC New world arenaviruses. OX NCBI_TaxID=144752; XX FH Key Location/Qualifiers FH FT source 1..6606 FT /organism="Allpahuayo virus" FT /segment="L" FT /strain="CLHP-2472" FT /mol_type="genomic RNA" FT /country="Peru" FT CDS AY216502.2:31..6636 FT /codon_start=1 FT /product="L protein" FT /note="polymerase" FT /db_xref="GOA:Q6XQI9" FT /db_xref="InterPro:IPR010453" FT /db_xref="UniProtKB/Swiss-Prot:Q6XQI9" FT /func_characterised="identical sequence" FT /protein_id="AAP44538.2" FT /translation="MDVHLIELRDLVRKWVPDDLELSEQKNIMLAQTQIRATVVESLKL FT LSTIVEVDSCKKHSCVHNTSKTVNAILREHKIIGPTLPDVTPDGYCVIGDVLILLEVFV FT RTNQESFEKKFNQDFEKLMQMSADLKKCGVTLVPTIDGRSTYYVDFIPDWVVERLRWLI FT SRLMSSLREDGQEIEELEYERLISSLSSLENQSLGLESLLAMREKGLSYKETLDKLFLE FT GMENKLTVDESRTRIMKMFQIFRTLLESGYLERKYQTTDREDMLKRLRDHEFIVCSKSV FT EYTFDCPNCSVHLYKVLNLLLNQGSRGAPHQCLGEYMKTLSICNKIKSMKILNTRRNTL FT LILDTIMLNKFLDLEKVFGHVVVERVMIMQSLMTVNDRLLSIDVLMEMLEKKMTRNPLW FT FLKVNEKLRKLCPPEVYQSIEEYVHEVDRDHWFELKLTLHQTWPAKPLIDYKGKMRCTC FT VEKDSNNKNQLSDLTEEKFQLLLKKLSSFCLGITNSLKTSAVAKLRVNQPDDYYGKVTC FT SEVFFQSLDKEHSAVLLYQKTGEKSRAYGLAFNNVVTGQYTTEASFYCDPKRFFLPIMS FT DVVLFRMCNEMLSWLDYLSDDVMLEVRTCLYRLVLSILCTPSKRVQVYIQGLRYFIMAF FT VNEFHCTGLLDKLKVTALTESERYCMKLCDDLVVKVLNSVEDENMAKAFKFVLNTSYLC FT HLITKETPDRLTDQIKCFEKFLEPKLDFGSVIVNPDSSCELTAGQEEQFYQGLEKLFTD FT KKLESSYANKPGVCKEVLNVCMSLFNSGALEVKPLLNHDPITPSFTSTALDLSSNKSVV FT VPKLDELGEVLTEYDYSKLVSSVVVDLVEHFKTKGKYVVSPRSLQYKIYKRLSNLVQQR FT AGKGNKESELTEEEFLEQVTAEQLEVINKVETKVSRTLSGIKLSSDTENAKHDDDYHLK FT KLWSKDIMVRIKAETSLHEVKDFNVDTLPFDLYRELVDAIYNDPAANSHYFSERIFNPC FT PLELLIKNLTLKAYKEEDFFECFKYILISSNFDNKVGKYDHKNRSRLGLSSAALLVKDE FT ARISMRESNSESIAKRLDKSFFTNSSLRNLCFYSDESPTERTSVSSNVGKLKFGLSYKE FT QVGGNRELYVGDLNTKLTTRLVEDYAESLTSDMKYTCLNNENEFERALLDMKSVVRQSG FT LAVSMDHSKWGPHMSPALFSLMLRGLDFRLKDGTLIDKEAVVNILSWHIHKMVEVPFNV FT VEAYLKGFIKRGLGLMDRGGATRVEEFMFGYFDQGIVPSHISSVIDMGQGILHNLSDLY FT GLITEQFIVYALDLCYSSSFMAYTSSDDEILLSISNSFKRNDGSMDMDLAIEALEFHYF FT LSDRLNKFVSPKTVAGTFASEFKSRFFIWSQEVPLLTKFVAASLHNVKAKAPSQLAETI FT DTILDQSVANGVSIEIIGAIAPRTNALITYSGHPFNLFLCLEETDVRDWVDGSRGYRLQ FT RSIENAFPDDVLPEIIRSACRKIFYRIQSGTLEEDYIVTTLQQSPDDCLKQMLTSCDVE FT KEAIDDICNYRWLNLRAHGDLRLVLRTKIMTSTRTLQKEEVPSLIKSVQSKLSKNFVRG FT AKKILADAINKSAFQSCISSGFVGVCKSMGSKCVRDGKGGFKYIKDILKEIKHHEKPDC FT HFCKELKGIYCSELLENISEFSRPLFWDYFSLVLSNACELGNWVFCKIEIPKSVYHLNN FT PNHFWPIKPSSHAELEEKVGMNHVLYSIRRNFPVLFDEHISPYLSDLNMLKLNWVQKIR FT FLDICVAIDMTSECLGIISHIIRRKREELYIVKQSELSMSHTRVSLPLERGFNIEPDEV FT CHNFLLQILFESMIHPVLLTTSQFKRYFWYSEVELLPKEALHDLGQFTQFIIDCKVLNS FT SRAMCLDDLDVGYVSSKVKRTDTYLNLSTFMTNLDWENRHEYSSFEDLILSSPSEVFLF FT EITFTFSHIRRSHKFRYDRSTNYILKTKLVIEKSELVNGEDGVYCVTPHSIEYYVSQSS FT GNHISLDGVSLLVLDPLISGRELVNMDELLQNQDVTFSAPSQILSKIKLDFKPFTKEIK FT NKFSYKLIGPDVDMSPLHLDKGAIKEGDRIVSQIEIQVSFKSVITAIELLDEDQRKIFV FT GNLFVYLTSLKSVNRALSMSESDLRLLVENYPSVIEYMLSGCDGWLNCGSFSLIKSKTL FT QCIMLADERGPYRIKGQNCRRLFPTEEAIEIE" XX SQ Sequence 6606 BP; 2116 A; 997 C; 1483 G; 2010 T; 0 other; 1119567491 CRC32; atggatgttc acttgatcga attgagagat cttgtgagaa agtgggtccc tgatgacctg 60 gaactgtcag aacagaaaaa cattatgtta gcacagacac aaatcagagc aacagttgta 120 gagagcttaa aacttttgtc cacgattgta gaagtagact cctgtaaaaa acactcctgt 180 gtccacaaca ctagcaaaac tgtcaacgca atacttaggg agcacaagat cattgggccc 240 actttaccgg atgtgactcc agatgggtac tgtgtgattg gggatgtatt aatactcctt 300 gaagtgtttg ttagaacaaa tcaagaatca tttgaaaaaa agtttaatca ggattttgag 360 aagttgatgc aaatgagtgc agatctgaaa aagtgtggtg taactcttgt gcctacaata 420 gatggcagaa gtacatatta tgttgatttt attcctgact gggttgtgga aaggttaaga 480 tggttgataa gcagattgat gtcaagtctt agggaggatg gtcaagaaat tgaagagctg 540 gaatatgaga ggctcatcag cagtctatct agtcttgaaa accaaagttt agggcttgaa 600 tcactattag cgatgagaga aaaaggtctt tcctataagg aaacattaga taagttgttt 660 ctagaaggaa tggagaacaa gttgacagtt gatgagtcca gaaccaggat tatgaagatg 720 tttcaaattt ttaggacatt gttagaaagt ggttatctgg agaggaagta tcaaacaaca 780 gatcgagagg acatgttaaa aagattaagg gatcatgaat tcattgtgtg ttctaaaagt 840 gttgagtaca cttttgactg tcccaattgc tctgttcatc tctataaagt gttgaatcta 900 cttttaaatc aaggctcacg aggtgctcct catcagtgtc tgggagaata tatgaagact 960 ttatcgatct gtaataagat taagtcaatg aaaattttaa acaccagaag gaacactctt 1020 ctaattcttg acactataat gctaaacaag tttttagatc tagaaaaagt atttggtcat 1080 gtcgttgtag agagagtcat gatcatgcag tctttaatga cagtgaatga taggctttta 1140 tcaatcgatg tcttaatgga aatgttggag aaaaagatga ccaggaatcc gttgtggttt 1200 ttgaaagtta atgagaaatt aagaaaactt tgtcctcccg aggtgtatca aagtatagaa 1260 gagtatgtac atgaggttga cagggatcac tggtttgagt tgaaactgac actacatcaa 1320 acgtggcctg caaaacccct aattgactat aagggaaaaa tgaggtgtac ttgtgttgag 1380 aaggactcta acaataagaa tcaattgagt gatttgactg aagaaaaatt tcaactcctt 1440 ttaaagaaat tatcaagttt ctgtttgggg attactaata gcttgaaaac atctgcagtg 1500 gcaaaattaa gagtaaatca accagatgat tattatggga aagttacctg tagtgaagtg 1560 ttcttccaga gtcttgataa agagcattca gcagttctgt tgtaccagaa aactggtgag 1620 aaatcaaggg catacggtct tgcttttaac aatgtggtta caggtcagta tacaacagaa 1680 gctagttttt actgtgatcc caaaaggttc tttctgccta tcatgagtga tgttgtgttg 1740 tttagaatgt gtaatgaaat gctcagttgg ctggattatt taagtgatga tgtcatgtta 1800 gaagtaagga catgtctgta tagacttgta ttgtcaattt tgtgtactcc ttcaaagaga 1860 gtgcaagttt atattcaggg gttaaggtat tttattatgg cctttgttaa tgaattccat 1920 tgcactgggt tgcttgacaa gttgaaagtg actgcactca ctgaatcaga gcgctattgc 1980 atgaagttat gtgatgacct tgttgtgaaa gtattgaata gtgtggagga tgaaaacatg 2040 gcaaaagcct tcaagtttgt gttgaacaca tcttacttat gtcatctcat aacaaaggaa 2100 acccctgata ggctgacaga tcaaataaaa tgcttcgaaa agtttttaga acccaaattg 2160 gattttggga gcgtcattgt taatccagac tcatcctgcg agctaacagc aggacaagaa 2220 gaacagtttt atcagggttt ggagaagctt ttcacagata agaagttgga gtcatcatat 2280 gccaacaagc caggtgtttg caaagaggtt ttgaatgttt gtatgtctct atttaatagt 2340 ggcgcgcttg aggttaagcc attgttgaac cacgatccta taactccttc ctttacgagc 2400 actgcattag atttgtccag taataaaagt gtggtggtac caaaacttga tgaattgggt 2460 gaggtattga ctgagtatga ttattctaaa ctagtttcaa gtgttgtggt ggatctggtt 2520 gagcacttta aaaccaaagg aaagtatgtt gtatccccca ggtctcttca gtataaaatc 2580 tacaagagat tatcgaactt agttcagcag agggcaggga aaggaaataa ggagtcagag 2640 ttaactgagg aagagttctt ggaacaggtc actgcagaac agttggaggt tatcaataag 2700 gttgaaacaa aggtgtcaag aacattatca gggattaaat tgtcatctga tacagaaaat 2760 gcaaaacatg atgatgatta ccatctgaag aaactgtggt ctaaagacat tatggtgagg 2820 attaaggcag agacgagctt acatgaagtc aaagatttta atgttgacac attgccattt 2880 gatttataca gagaattggt ggatgcaatt tacaatgatc cagcagcaaa ttcccattat 2940 ttctcggaga gaattttcaa tccatgtcct ttagagttgc tcatcaagaa tctgacattg 3000 aaggcatata aagaagagga tttctttgag tgtttcaaat acattttgat cagcagtaat 3060 tttgacaaca aggtaggaaa atatgatcat aagaatcgta gtcgtttggg tttgtcaagc 3120 gcagcattgc ttgtcaaaga tgaagctaga atcagtatga gagagagtaa ttcagaatct 3180 atagctaaga ggctagataa gagtttcttt accaactcat cattaaggaa cctctgcttt 3240 tactcagatg aatcaccaac agagaggacc agtgtttcaa gtaatgttgg gaagttgaag 3300 tttggcttgt cttacaaaga gcaggtaggt gggaataggg aattgtatgt aggtgatttg 3360 aataccaagc ttaccacgag attggtggag gactatgctg aatcactgac atcagatatg 3420 aagtatactt gccttaataa tgaaaatgag tttgagagag cattgttaga tatgaaatca 3480 gttgtgaggc aaagtggtct agctgtaagc atggaccatt ccaaatgggg gccacatatg 3540 tcaccagcgt tgttctcact gatgttacgg ggtttagatt tccggcttaa agatggcaca 3600 cttatcgata aagaagcagt ggtgaacatt cttagttggc acattcacaa aatggttgaa 3660 gtacctttca atgttgttga agcatattta aaggggttca taaaaagggg gttgggattg 3720 atggatagag gtggtgcgac tagggttgag gaattcatgt ttggttattt tgatcaagga 3780 atcgtaccgt cacacatttc atcagtcatt gacatgggtc aagggattct acacaatttg 3840 tcggatttat atgggttgat aaccgagcaa ttcatagttt atgctttaga cttgtgttac 3900 tcatcttctt tcatggctta cacatcaagt gatgatgaaa tattgctttc catttctaac 3960 agttttaaga gaaatgatgg ttcaatggat atggacttag caattgaagc acttgagttc 4020 cactatttct tatctgatag acttaataaa tttgtaagtc cgaagactgt tgcaggaacc 4080 tttgctagtg aattcaagtc tagatttttt atctggtcac aagaagtacc cttacttacg 4140 aaatttgttg cagcatcact acataatgtg aaagcaaagg ctccttcgca gttagccgaa 4200 acaatagata ctattcttga tcagtctgtt gcaaatggtg tctccattga aattattggg 4260 gcaattgccc cgagaacgaa tgcgcttata acatatagtg ggcatccatt taatcttttc 4320 ttatgcttag aggaaacaga tgtgagagac tgggttgatg gatcaagagg gtatagattg 4380 caaaggtcta tagagaatgc atttcctgat gatgttctac cagaaattat tcgctctgcc 4440 tgcagaaaaa tcttttatag gattcaatca ggaactttag aagaggacta tattgtgaca 4500 acattgcaac aatcgccaga tgattgctta aaacagatgc taacatcatg tgatgtggag 4560 aaagaggcaa tagatgatat atgcaactat agatggttga atctaagagc tcatggggat 4620 cttagactcg ttcttaggac caaaattatg acatcaacta gaacattaca aaaggaggaa 4680 gtcccaagcc tgattaaatc agtgcagtcc aaactttcaa agaactttgt tcggggggca 4740 aagaagatct tagctgacgc aataaacaag tcagctttcc aaagttgtat ctcttctggc 4800 tttgttgggg tctgcaaaag tatgggatca aaatgtgtta gggatggtaa aggaggattc 4860 aagtacatca aagacatttt aaaagaaatt aaacaccatg agaagcctga ctgtcatttt 4920 tgcaaagagc tgaagggtat ttattgtagt gagcttcttg aaaacatatc agaattttct 4980 agacctcttt tctgggatta tttttcattg gtcctttcga atgcttgtga gttgggtaac 5040 tgggtctttt gtaagataga aataccaaaa agtgtgtacc acttgaataa tcctaaccat 5100 ttttggccaa tcaagccatc cagtcatgct gaattagaag agaaggtggg aatgaatcat 5160 gttctgtatt caattagaag aaatttccca gtgttatttg atgagcatat aagcccttat 5220 ttgtcagact tgaatatgtt aaagttgaat tgggtgcaaa agattagatt tctagacatt 5280 tgtgtagcaa ttgacatgac ctcagagtgt ttgggtatta tatcacacat cattagaagg 5340 aaaagagaag agttgtatat tgtgaaacag agtgaattgt caatgtctca taccagagtt 5400 tctcttccac tagagagagg attcaacata gaacctgatg aagtctgtca caattttctt 5460 ttacaaatat tgtttgagtc aatgatacac ccagtgcttt tgacgactag tcaatttaag 5520 aggtactttt ggtacagtga ggttgaactt ttgcctaagg aggcattgca cgatttagga 5580 cagtttactc agttcataat tgattgtaaa gtgttaaata gctcaagggc aatgtgtctg 5640 gatgatctag atgtaggtta tgttagtagt aaagtcaaga gaacagacac ctacttgaat 5700 ttatcaactt tcatgacaaa tcttgactgg gaaaatagac atgagtactc ttcatttgaa 5760 gacttgatcc tgagttcccc atctgaagtc ttcttatttg agatcacctt cactttttca 5820 catattagaa ggagccacaa gtttagatat gacagatcaa caaattacat tttgaaaacc 5880 aaattggtta ttgagaagtc tgaattagtt aatggggagg atggtgtcta ttgcgtgaca 5940 ccgcactcta tagagtatta tgtctcccag tcatctggta atcacatcag tctagatggt 6000 gtgtctttat tggtgttgga ccctctaatc tcaggtagag aattggtgaa catggatgaa 6060 cttttacaaa accaggatgt gacattttct gctccatcac aaattttaag caagattaaa 6120 ttggatttca agcctttcac caaggaaata aagaataagt tctcctataa gttgatagga 6180 cctgatgtag atatgtcacc attgcacctt gataaagggg caattaaaga aggtgacagg 6240 attgtttcac aaattgagat tcaggtgtca tttaagtctg ttatcacagc aatagagctt 6300 ttagatgaag atcaacgtaa gatctttgtg ggcaatttat ttgtgtattt aacttctctc 6360 aagtcagtta acagagcact atccatgtca gaatcagact tgaggctatt ggtggaaaac 6420 tatccaagtg taattgagta tatgttaagt ggttgcgatg gatggcttaa ttgtggctca 6480 ttctcactga tcaaaagtaa aacactacag tgtatcatgt tggctgatga gagaggtccc 6540 tataggatca aaggacaaaa ctgcagaaga ttgtttccaa cggaggaggc aatagagatc 6600 gaataa 6606 // |
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