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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AAH83517; SV 1; linear; mRNA; STD; VRT; 1983 BP.
XX
PA   BC083517.1
XX
DE   Danio rerio (zebrafish) galactosylceramidase a
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
OX   NCBI_TaxID=7955;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1983
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /strain="AB"
FT                   /mol_type="mRNA"
FT                   /clone_lib="Sugano Kawakami zebrafish DRA"
FT                   /clone="MGC:92561 IMAGE:2351819"
FT                   /tissue_type="Whole body, adult, (one male and one female,
FT                   including unfertilized eggs)"
FT   CDS             BC083517.1:72..2054
FT                   /codon_start=1
FT                   /gene="galca"
FT                   /product="galactosylceramidase a"
FT                   /db_xref="GOA:Q5SNX7"
FT                   /db_xref="InterPro:IPR013781"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q5SNX7"
FT                   /db_xref="ZFIN:ZDB-GENE-040724-243"
FT                   /func_characterised="similar sequence"
FT                   /protein_id="AAH83517.1"
FT                   /translation="MQTHNFLCIIFVILGCSAQFYVIDDRIGLGREFDGIGGLSGGGAT
FT                   SRLLVNYEEPYRSQILDYLFKPNFGASLHILKVEIGGDAQTTDGTEPSHMHSKDEGNFF
FT                   RGYEWWLMKEAKKRNPNIKLIGLPWAFPGWVGYGTQWPYFFPNVTANYVITWVMGAKQH
FT                   HNLDIDYIGIWNEKAFDPTYIKVLRDVLDRAGFTNIGIIAADGDWSIASAMLDDPYLND
FT                   AVEVIGVHYPGTNTVKEALLTERKLWSSEDYSTYNDDIGAGCWARILNQNYVNGKMTST
FT                   ISWNVIASYYENLSFGRDGLMTAEEPWSGHYIVESPIWMTAHTTQFTQPGWFYLQTVGK
FT                   LNHGGSYVALTDRKGNLTIIIETMTHEHSQCIRPPLPHFDVSPQIATFELKGSFAHLAD
FT                   LQVWYSKLDFKSGNGTLFRQLRPIRAHNGLLSLKLDVDEVFTITTVTTAQRGFYPEPPK
FT                   SCPFPKNYTDDFTIDNPPFSEAPYFADQTGVFEYFRNTTDNSSHAFTLRQVVIERPVAW
FT                   AKDADQTISIIGDYSWSDVNVSCDVFIETPKTGGVFLAARVDQGGESVRQAKGVFYWIY
FT                   ANGTYRVTNDIGGKGVLAEGLSGTKAGVWYTLTLSVKGYFATGSLNGFPLWKNAAVLEP
FT                   KSGWAALGTLSFEYAQFDNFNVIAG"
XX
SQ   Sequence 1983 BP; 547 A; 430 C; 488 G; 518 T; 0 other; 1571099135 CRC32;
     atgcaaacgc acaattttct gtgcataatc ttcgtcattc tcggatgttc ggctcagttt        60
     tatgttatag atgatcggat tggtttaggg cgggagtttg atggaatagg aggcttaagt       120
     ggtggaggag ccacttctcg acttcttgtc aattatgaag aaccctatcg gagtcagata       180
     ttggattact tattcaagcc caactttgga gcttcacttc acatcctcaa ggtagaaata       240
     ggaggcgatg ctcaaaccac agatggcaca gaaccctctc acatgcacag taaggatgag       300
     gggaattttt tccgtggata cgagtggtgg cttatgaagg aagccaagaa aagaaatcca       360
     aacattaagc tgatcggtct tccctgggca tttcccggat gggttggata cggaacccaa       420
     tggccttact tttttccaaa tgttacagcc aactatgtta tcacatgggt catgggagca       480
     aagcagcatc ataaccttga cattgattat atcgggattt ggaatgagaa agcatttgat       540
     ccgacataca ttaaggtgct gagagatgtt ttggacagag ctggcttcac gaatatcggc       600
     atcattgctg cagatggaga ctggtctatt gcgtctgcca tgctggatga tccatatctg       660
     aatgatgctg tcgaggtcat aggtgtccac tacccaggaa ccaacacagt aaaggaagct       720
     ctgttgacgg agagaaagct ctggtcatct gaagactaca gcacctacaa tgacgacatc       780
     ggtgccggat gttgggctcg cattctcaac cagaactacg tgaatggcaa aatgacctcg       840
     actatatcct ggaatgtaat agcaagttat tatgagaatc tgtcatttgg tagagatggt       900
     ctgatgacgg cagaggagcc ctggagtgga cattatatag tggaatctcc aatatggatg       960
     actgctcaca ctactcaatt cacacagcca ggctggtttt atctgcagac tgtgggcaaa      1020
     ctcaaccacg gaggaagtta tgtggctttg acagaccgca aagggaactt aacaattatt      1080
     atagaaacca tgacacacga gcactctcag tgcattcgtc caccattgcc gcactttgac      1140
     gtctctcctc agatcgccac atttgagctc aaaggctcct ttgcacatct cgctgacctt      1200
     caagtgtggt actcaaaact ggattttaag tctggaaatg gtacactgtt taggcaactg      1260
     aggcctatta gggcccacaa tggcttgtta agcttaaaac tagatgtcga tgaggtcttt      1320
     actatcacaa cggtcaccac tgcgcaaaga ggcttctacc cagagccccc caaatcatgc      1380
     ccgttcccta agaattacac cgatgatttt acaatagata accctccatt ctctgaggcc      1440
     ccgtactttg ctgatcaaac cggtgtgttt gagtacttca gaaacactac agataacagc      1500
     tcccatgcct ttactcttcg ccaagtggtc attgagcggc cggtggcctg ggctaaagat      1560
     gccgaccaaa ccatcagcat cataggagac tacagctggt cagacgtaaa tgtgtcatgt      1620
     gatgtcttta ttgaaacccc caagactgga ggagtgttcc tggcggccag ggtcgatcaa      1680
     ggcggagaat cagtccgaca agcaaagggg gtcttttact ggatttatgc aaatgggacc      1740
     tatagagtga caaatgacat aggtgggaaa ggagttcttg ctgaagggct gtcaggaaca      1800
     aaggcaggag tatggtacac cttaactctt agcgtcaagg gatattttgc cacagggtca      1860
     ctgaacggct ttccgttgtg gaaaaatgct gctgttctgg agcccaagag tggttgggct      1920
     gcactaggaa ctttatcttt tgaatacgca cagtttgata attttaatgt gattgcaggg      1980
     tga                                                                    1983
//
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