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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AAF83730; SV 1; linear; genomic DNA; STD; PRO; 2448 BP.
XX
PA   AE003849.1
XX
DE   Xylella fastidiosa 9a5c DNA topoisomerase I
XX
OS   Xylella fastidiosa 9a5c
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales;
OC   Xanthomonadaceae; Xylella.
OX   NCBI_TaxID=160492;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2448
FT                   /organism="Xylella fastidiosa 9a5c"
FT                   /mol_type="genomic DNA"
FT                   /clone="9a5c"
FT   CDS             complement(AE003849.1:884246..886693)
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /locus_tag="XF_0920"
FT                   /old_locus_tag="XF0920"
FT                   /product="DNA topoisomerase I"
FT                   /note="similar to SP|Q9ZDK2 (percent identity: 41 %/query
FT                   alignment coverage: 96.9 %/subject alignment coverage:
FT                   101.8 %); identified by sequence similarity; putative; ORF
FT                   located using Glimmer/RBSfinder"
FT                   /db_xref="GOA:Q9PEV8"
FT                   /db_xref="HSSP:1ECL"
FT                   /db_xref="InterPro:IPR005733"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9PEV8"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="AAF83730.1"
FT                   /translation="MPKHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVD
FT                   PENGFAMRYDLIDKNEKHVEAITKAAKTADSIYLATDPDREGEAISWHISEILKERGLL
FT                   KDKPMQRIVFTEITPRAIKEAIQKPRMIASDLVDAQQARRALDYLVGFNLSPVLWRKVQ
FT                   RGLSAGRVQSPALRMIVEREEEIEAFITREYWSIHAECAHPAQHFSAKLIKLDGQKFEQ
FT                   FTITDSDTAAAAQRRIQQVAQGRLHITDVTNKERKRRPAPPFITSTLQQEASRKLGFTT
FT                   RKTMQIAQKLYEGIALGEEGSVGLITYMRTDSVNLSLDALSEIRDIIARDYGTNALPDK
FT                   PNVYTTKSKNAQEAHEAVRPTSALRTPTQVAPYLSNEEHRLYELVWKRAVASQMIPAIL
FT                   NTTSVDLAAGNEHVFRATGTTVVVQGFLAVYEEGKDNKNAEDDDEGRKLPVMKTGENVP
FT                   LERILTEQHFTQPPPRYTEAALVKALEEYGIGRPSTYASIIQTLLFRKYVDMEGRSFRP
FT                   TDIGRAVSKFLASHFTRYVDYDFTAHLEDELDAISRGEEEWIPLMKKFWVPFKELVEDK
FT                   KDSLDKTDAGSVRLLGIDPTSGKEVSGRIGRFGPMVQIGTVDDEEKPRFASLRPNQSIY
FT                   SISLEEAIELFKMPRVLGEDQSQQVSVGIGRFGPFAKRGSTYVSLKSEDDPYTIDLARA
FT                   TFLINEKEEIARNRIIKNFENSQIQVLNGRFGPYISDGKLNGKIPKDREPASLTLEEAQ
FT                   QLLIDTGKPARKNFSTKKTATKNETRKQTTKKRTTDAKATKKVSDKPVKKQIKKRIAPN
FT                   ITE"
XX
SQ   Sequence 2448 BP; 753 A; 715 C; 556 G; 424 T; 0 other; 1463895713 CRC32;
     atgcccaaac accttcttat cgtcgaatcg cccgccaagg ccaagacgat caataaatat        60
     ctcggcaaag atttcaccgt cttagcctct tacgggcatg tacgcgattt ggtaccgaag       120
     gaaggcgcag tcgatccaga aaacggcttt gcgatgcgct acgacctcat cgacaagaac       180
     gaaaagcacg tcgaagcaat cacaaaagcg gccaaaacag ccgacagcat ctatctagca       240
     actgaccctg atcgcgaagg cgaagcgatc agctggcaca tctccgagat ccttaaagaa       300
     cgtggattat tgaaggacaa accgatgcaa cgcatcgtgt tcaccgagat cacaccacgc       360
     gcaattaagg aagcgattca aaagccgcgg atgattgcca gcgacctggt agacgcccaa       420
     caagcacgcc gtgcgctgga ttacttggtt ggcttcaacc tctcaccagt gctgtggcgc       480
     aaagtacaac gcggtttatc ggcagggcgt gtgcaatcgc cagcactgcg catgattgtc       540
     gagcgtgaag aggaaattga ggcattcatc acgcgcgaat attggagcat ccatgccgag       600
     tgtgcccatc ccgcccaaca cttcagcgcc aaactcatca aactggatgg gcaaaaattc       660
     gagcaattca ctattaccga cagcgacact gccgcagccg cacaacgcag gatccagcag       720
     gtcgcacagg gacgcctgca catcactgac gttaccaaca aagaacggaa acgacgccct       780
     gcaccgccct tcatcacatc cacattacag caagaagcct cacgcaaact cggtttcact       840
     acacgtaaaa cgatgcagat tgcgcaaaaa ctttacgagg ggatcgcact gggtgaggaa       900
     ggcagcgtcg gcctgattac gtatatgcgt accgactcag tcaacctgtc gctggatgct       960
     ctatcggaga tccgcgacat catcgcacgc gactacggta ccaacgcact tccagacaaa      1020
     cctaacgtct acaccaccaa atccaaaaac gcacaagaag cacacgaagc agtacgccca      1080
     acttcagcac tacgcacccc gacacaggtc gcaccgtatc tttctaacga agaacaccgg      1140
     ctatacgaac tggtgtggaa acgtgcagtg gcctcccaaa tgatcccagc catactcaat      1200
     accaccagtg tcgatctagc cgccggcaac gaacacgtat tccgtgccac cggaaccacc      1260
     gtcgtagtac aaggtttcct agctgtgtac gaagaaggca aggacaacaa gaacgccgaa      1320
     gacgatgacg aaggccgcaa actccccgta atgaaaaccg gggaaaatgt tccgctagaa      1380
     cgtatcctga ccgaacaaca ctttacacag ccaccaccac gctacaccga agcagcgttg      1440
     gtcaaagctc tggaagaata cggcatcggt cgcccatcga cttacgcctc catcatccaa      1500
     accctgctat ttcgcaaata cgtagacatg gaaggtcgca gcttccgccc aacggacatt      1560
     ggccgcgccg tctccaaatt tctcgccagc cacttcaccc ggtacgtgga ctacgacttc      1620
     accgcacacc tggaagatga attggatgca atctcacgtg gcgaggaaga atggatccca      1680
     ctgatgaaaa agttttgggt cccgttcaaa gaattggttg aagataaaaa agactccctt      1740
     gataaaactg acgctggcag tgtgcgcctg ctcggcattg accccaccag tggcaaagaa      1800
     gtcagcggac gcattggccg cttcggaccg atggtgcaaa tcggcaccgt tgatgatgaa      1860
     gaaaaaccaa gatttgcctc attacgcccc aaccaaagca tctactcaat cagcctcgaa      1920
     gaagccatcg aattgttcaa aatgccacgc gtgcttggag aagaccaaag ccaacaggtc      1980
     agcgtcggca tcggccgctt tggaccgttt gccaaacgtg gcagcactta tgtttcactg      2040
     aaaagcgaag acgatcccta cacgattgac ttggcgcgcg cgacctttct catcaacgag      2100
     aaagaagaaa tcgcgcgtaa tcgaatcatc aaaaacttcg aaaacagcca gatccaagta      2160
     ctgaacggac gcttcggtcc ctacatcagc gatggcaaac ttaacgggaa gatccccaag      2220
     gatcgcgaac cagcctcact gactctcgaa gaagcacagc aattactgat agacactggg      2280
     aaaccggcac gcaaaaactt cagtacgaaa aaaactgcaa ccaagaacga gacgcgcaaa      2340
     caaaccacca aaaaacgcac tacggacgca aaggcaacca aaaaagtgtc agataagccc      2400
     gtaaagaaac aaatcaaaaa acgcatcgcc cccaacatta ccgaataa                   2448
//
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