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EBI DbfetchID AAF71286; SV 1; linear; genomic RNA; STD; VRL; 6498 BP. XX PA AF254574.1 XX DE Human respiratory syncytial virus polymerase L XX OS Human respiratory syncytial virus OC Viruses; ssRNA negative-strand viruses; Mononegavirales; Paramyxoviridae; OC Pneumovirinae; Pneumovirus. OX NCBI_TaxID=11250; XX FH Key Location/Qualifiers FH FT source 1..6498 FT /organism="Human respiratory syncytial virus" FT /strain="Long" FT /mol_type="genomic RNA" FT /clone="LL2" FT CDS AF254574.1:9..6506 FT /codon_start=1 FT /gene="M2" FT /product="polymerase L" FT /db_xref="GOA:Q9IWW8" FT /db_xref="InterPro:IPR001016" FT /db_xref="UniProtKB/Swiss-Prot:Q9IWW8" FT /func_characterised="identical sequence" FT /protein_id="AAF71286.1" FT /translation="MDPIINGNSANVYLTDSYLKGVISFSECNALGSYIFNGPYLKNDY FT TNLISRQNPLIEHMNLKKLNITQSLISKYHKGEIKLEEPTYFQSLLMTYKSMTSLEQIA FT TTNLLKKIIRRAIEISDVKVYAILNKLGLKEKDKIKSNNGQDEDNSVITTIIKDDILSA FT VKDNQSHLKADKNHSTKQKDTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLNNILTQYR FT SNEVKNHGFILIDNQTLSGFQFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLSRLN FT VCLITWISNCLNTLNKSLGLRCGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGFIM FT SLILNITEEDQFRKRFYNSMLNNITDAANKAQKNLLSRVCHTLLDKTVSDNIINGRWII FT LLSKFLKLIKLAGDNNLNNLSELYFLFRIFGHPMVDERQAMDAVKVNCNETKFYLLSSL FT SMLRGAFIYRIIKGFVNNYNRWPTLRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLS FT GLRFYREFRLPKKVDLEMIINDKAISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFSES FT DKSRRVLEYYLRDNKFNECDLYNCVVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGM FT FRQVQILAEKMIAENILQFFPESLTRYGDLELQKILELKAGISNKSNRYNDNYNNYISK FT CSIITDLSKFNQAFRYETSCICSDVLDELHGVQSLFSWLHLTIPHVTIICTYRHAPPYI FT RDHNVDLNNVDEQSGLYRYHMGGIEGWCQKLWTIEAISLLDLISLKGKFSITALINGDN FT QSIDISKPVRLMEGQTHAQADYLLALNSLKLLYKEYAGIGHKLKGTETYISRDMQFMSK FT TIQHNGVYYPASIKKVLRVGPWINTILDDFKVSLESIGSLTQELEYRGESLLCSLIFRN FT VWLYNQIALQLKNHALCNNKLYLDILKVLKHLKTFFNLDNIDTALTLYMNLPMLFGGGD FT PNLLYRSFYRRTPDFLTEAIVHSVFILSYYTNHDLKDKLQDLSDDRLNKFLTCIITFDK FT NPNAEFVTLMRDPQALGSERQAKITSEINRLAVTEVLSTAPNKIFSKSAQHYTTTEIDL FT NDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNLISGTKSITNILEKTSAIDLTDIDRAT FT EMMRKNITLLIRILPLDCNRDKREILSMENLSITELSKYVRERSWSLSNIVGVTSPSIM FT YTMDIKYTTSTIASGIIIEKYNVNSLTRGERGPTKPWVGSSTQEKKTMPVYNRQVLTKK FT QRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLTYEKAKKLFPQYLSVNYLHRLTVS FT SRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDEDIDIVFQNCISFGLSLMSVVEQF FT TNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVIQKQHMFLPDKISLTQYVELFL FT SNKTLKSGSHVNSNLILAHKISDYFHNTYILSTNLAGHWILIIQLMKDSKGIFEKDWGE FT GYITDHMFINLKVFFNAYKTYLLCFHKGYGKAKLECDMNTSDLLCVLELIDSSYWKSMS FT KVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEFTVCPWVVNIDYHPTHMKA FT ILTYIDLVRMRLINIDRIHIKNKHKFNDEFYTSNLFYINYNFSDNTHLLTKHIRIANSE FT LENNYNKLYHPTPETLENILANPIKSNDKKTLNDYCIGKNVDSIMLPLLSNKKLVKSSA FT MIRTNYSKQDLYNLFPTVVIDRIIDHSGNTAKYNQLYTTTSHQISLVHNSTSLYCMLPW FT HHINRFNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGNLLLRTVVELHPDIRYI FT YRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWSYLHIKFAEPISLF FT VCDAELPVTVNWSKIIIEWSKHVRKCKYCSSVNKCTLIVKYHAQDDIDFKLDNITILKT FT YVCLGSKLKGSEVYLVLTIGPANIFPVFNVVQNAKLILSRTKNFIMPKKADKESIDANI FT KSLIPFLCYPITKKGINTALSKLKSVVSGDILSYSIAGRNEVFSNKLINHKHMNILKWF FT NHVLNFRSTELNYNHLYMVESTYPYLSELLNSLTTNELKKLIKITGSLLYNFHNE" XX SQ Sequence 6498 BP; 2469 A; 970 C; 1031 G; 2028 T; 0 other; 1223363270 CRC32; atggatccca ttattaatgg aaattctgct aatgtttatc taaccgatag ttatttaaaa 60 ggtgttatct ctttctcaga gtgtaatgct ttaggaagtt acatattcaa tggtccttat 120 ctcaaaaatg attataccaa cttaattagt agacaaaatc cattaataga acacatgaat 180 ctaaagaaac taaatataac acagtcctta atatctaagt atcataaagg tgaaataaaa 240 ttagaagagc ctacttattt tcagtcatta cttatgacat acaagagtat gacctcgttg 300 gaacagattg ctaccactaa tttacttaaa aagataataa gaagagctat agaaataagt 360 gatgtcaaag tctatgctat attgaataaa ctagggctta aagaaaagga caagattaaa 420 tccaacaatg gacaggatga agacaactca gttattacga ccataatcaa agatgatata 480 ctttcagctg ttaaggataa tcaatctcat cttaaagcag acaaaaatca ctctacaaag 540 caaaaagaca caatcaaaac aacactcttg aagaaattaa tgtgttcaat gcagcatcct 600 ccatcatggt taatacattg gtttaattta tacacaaaat taaacaacat attaacacag 660 tatcgatcaa atgaggttaa aaaccatggg ttcatattga tagataatca aactcttagt 720 ggatttcaat ttattttgaa tcaatatggt tgtatagttt atcataagga actcaaaaga 780 attactgtga caacctataa tcaattcttg acatggaaag atattagcct tagtagatta 840 aatgtttgtt taattacatg gattagtaac tgcttgaaca cattaaataa aagcttaggc 900 ttaagatgcg gattcaataa tgttatcttg acacaactat tcctttatgg tgattgtata 960 ctaaagctat ttcacaatga ggggttctac ataataaaag aggtagaggg atttattatg 1020 tctctaattt taaatataac agaagaagat caattcagaa aacgatttta taatagtatg 1080 ctcaacaaca tcacagatgc tgctaataaa gctcagaaaa atctgctatc aagagtatgt 1140 catacattat tagataagac agtatccgat aatataataa atggcagatg gataattcta 1200 ttaagtaagt tccttaaatt aattaagctt gcaggtgaca ataaccttaa caatctgagt 1260 gaactatatt ttttgttcag aatatttggg cacccaatgg tagatgaaag acaagccatg 1320 gatgctgtta aagttaattg caatgagacc aaattttact tgttaagcag tttgagtatg 1380 ttaagaggtg cctttatata tagaattata aaagggtttg taaataatta caacagatgg 1440 cctactttaa gaaatgctat tgttttaccc ttaagatggt taacttacta taaactaaac 1500 acttatcctt ctttgttgga acttacagaa agagatttga ttgtgttatc aggactacgt 1560 ttctatcgtg agtttcggtt gcctaaaaaa gtggatctcg aaatgattat aaatgataaa 1620 gctatatcac cccctaaaaa tttgatatgg actagtttcc ctagaaatta tatgccgtca 1680 cacatacaaa actatataga acatgaaaaa ttaaaatttt ccgagagtga taaatcaaga 1740 agagtattag agtattattt aagagataac aaattcaatg aatgtgattt atacaactgt 1800 gtagttaatc aaagttatct caacaaccct aatcatgtgg tatcattgac aggcaaagaa 1860 agagaactca gtgtaggtag aatgtttgca atgcaaccgg gaatgttcag acaggttcaa 1920 atattggcag agaaaatgat agctgaaaac attttacaat tctttcctga aagtcttaca 1980 agatatggtg atctagaact acaaaaaata ttagaattga aagcaggaat aagtaacaaa 2040 tcaaatcgct acaatgataa ttacaacaat tacattagta agtgctctat catcacagat 2100 ctcagcaaat tcaatcaagc atttcgatat gaaacgtcat gtatttgtag tgatgtgctg 2160 gatgaactgc atggtgtaca atctctattt tcctggttac atttaactat tcctcatgtc 2220 acaataatat gcacatatag gcatgcaccc ccctatataa gagatcataa tgtagatctt 2280 aacaatgtag atgaacaaag tggattatat agatatcaca tgggtggtat tgaagggtgg 2340 tgtcaaaaac tatggaccat agaagctata tcactattgg atctaatatc tctcaaaggg 2400 aaattctcaa ttactgcttt aattaatggt gacaatcaat caatagatat aagcaaacca 2460 gtcagactca tggaaggtca aactcatgct caagcagatt atttgctagc attaaatagc 2520 cttaaattac tgtataaaga gtatgcaggc ataggtcaca aattaaaagg aactgagact 2580 tatatatcac gagatatgca atttatgagt aaaacaattc aacataacgg tgtatattac 2640 cctgctagta taaagaaagt cctaagagtg ggaccgtgga taaacactat acttgatgat 2700 ttcaaagtga gtctagaatc tataggtagt ttgacacaag aattagaata tagaggtgaa 2760 agtctattat gcagtttaat atttagaaat gtatggttat ataatcaaat tgctctacaa 2820 ttaaaaaatc atgcgttatg taacaataaa ttatatttgg acatattaaa ggttctgaaa 2880 cacttaaaaa ccttttttaa tcttgataat attgatacag cattaacatt gtatatgaat 2940 ttacccatgt tatttggtgg tggtgatccc aacttgttat atcgaagttt ctatagaaga 3000 actcctgatt tcctcacaga ggctatagtt cactctgtgt tcatacttag ttattataca 3060 aaccatgact taaaagataa acttcaagat ttgtcagatg atagattgaa taagttctta 3120 acatgcataa tcacgtttga caaaaaccct aatgctgaat tcgtaacatt gatgagagat 3180 cctcaagctt tagggtctga gagacaagct aaaattacta gtgaaatcaa tagactggca 3240 gttacagagg ttttgagtac agctccaaac aaaatattct ccaaaagtgc acaacattat 3300 accactacag agatagatct aaatgatatt atgcaaaata tagaacctac atatcctcac 3360 gggctaagag ttgtttatga aagtttaccc ttttataaag cagagaaaat agtaaatctt 3420 atatcaggta caaaatctat aactaacata ctggaaaaga cttctgccat agacttaaca 3480 gatattgata gagccactga gatgatgagg aaaaacataa ctttgcttat aaggatactt 3540 ccattggatt gtaacagaga taaaagagaa atattgagta tggaaaacct aagtattact 3600 gaattaagca aatatgttag ggaaagatct tggtctttat ccaatatagt tggtgttaca 3660 tcacccagta tcatgtatac aatggacatc aaatatacaa caagcactat agctagtggc 3720 ataattatag agaaatataa tgttaacagt ttaacacgtg gtgagagagg accaactaaa 3780 ccatgggttg gttcatctac acaagagaaa aaaacaatgc cagtttataa tagacaagtt 3840 ttaaccaaaa aacaaagaga tcaaatagat ctattagcaa aattggattg ggtgtatgca 3900 tctatagata acaaggatga attcatggaa gaactcagca taggaaccct tgggttaaca 3960 tatgaaaagg ccaaaaaatt atttccacaa tatttaagtg tcaactattt gcatcgcctt 4020 acagtcagta gtagaccatg tgaattccct gcatcaatac cagcttatag aacaacaaat 4080 tatcactttg acactagccc tattaatcgc atattaacag aaaagtatgg tgatgaagat 4140 attgacatag tattccaaaa ctgtataagc tttggcctta gcttaatgtc agtagtagaa 4200 caatttacta atgtatgtcc taacagaatt attctcatac ctaagcttaa tgagatacat 4260 ttgatgaaac ctcccatatt cacaggtgat gttgatattc acaagttaaa acaagtgata 4320 caaaaacagc atatgttttt accagacaaa ataagtttga ctcaatatgt ggaattattc 4380 ttaagtaaca aaacactcaa atctggatct catgttaatt ctaatttaat attagcacat 4440 aaaatatctg actattttca taatacttac attttaagta ctaatttagc tggacattgg 4500 attctaatta tacaacttat gaaagattct aaaggtattt ttgaaaaaga ttggggagag 4560 ggatatataa ctgatcatat gtttattaat ttgaaagttt tcttcaatgc ttataagacc 4620 tatctcttgt gttttcataa aggttatggc aaagcaaaac tggagtgtga tatgaacact 4680 tcagatcttc tatgtgtatt ggaattaata gacagtagtt attggaagtc tatgtctaag 4740 gtatttttag aacaaaaagt tatcaaatac attcttagcc aagatgcaag tttacataga 4800 gtaaaaggat gtcatagctt caaattatgg tttcttaaac gtcttaatgt agcagaattt 4860 acagtttgcc cttgggttgt taacatagat tatcatccaa cacatatgaa agcaatatta 4920 acttatatag atcttgttag aatgagattg ataaatatag atagaataca cattaaaaat 4980 aaacacaaat tcaatgatga attttatact tctaatctct tttacattaa ttataacttc 5040 tcagataata ctcatctatt aactaaacat ataaggattg ctaattcaga attagaaaat 5100 aattacaaca aattatatca tcctacacca gaaaccctag agaatatact agccaatccg 5160 attaaaagta atgacaaaaa gacactgaac gactattgta taggtaaaaa tgttgactca 5220 ataatgttac cattgttatc taataagaag cttgttaaat cgtctgcaat gattagaacc 5280 aattacagca aacaagacct gtacaatcta ttccctacgg ttgtgatcga tagaattata 5340 gatcattcag gtaatacagc caaatacaac caactttaca ctactacttc ccatcaaata 5400 tctttagtgc acaatagcac atcactttat tgcatgcttc cttggcatca tattaataga 5460 ttcaattttg tatttagttc tacaggttgt aaaattagta tagagtatat tttaaaagac 5520 cttaaaatta aagatcctaa ttgtatagca ttcataggtg aaggagcagg gaatttatta 5580 ttgcgtacag tggtggaact tcatcctgac ataagatata tttacagaag tctgaaagat 5640 tgcaatgatc atagtttacc tattgagttt ttaaggctat acaatggaca tatcaacatt 5700 gattatggtg aaaatttgac cattcctgct acagatgcaa ccaacaacat tcattggtct 5760 tatttacata taaagtttgc tgaacctatc agtctttttg tatgtgatgc cgaattgcct 5820 gtaacagtca actggagtaa aattataata gaatggagca agcatgtaag aaaatgcaag 5880 tactgttcct cagttaataa atgtacgtta atagtaaaat atcatgctca agatgatatt 5940 gatttcaaat tagacaatat aactatatta aaaacttatg tatgcttagg cagtaagtta 6000 aagggatcgg aggtttactt agtccttaca ataggtcctg caaatatatt tccagtattt 6060 aatgtagtac aaaatgctaa attgatacta tcaagaacca aaaatttcat catgcctaag 6120 aaagctgata aagagtctat tgatgcaaat attaaaagtt tgataccctt tctttgttac 6180 cctataacaa aaaaaggaat taatactgca ttgtcaaaac taaagagtgt tgttagtgga 6240 gatatactat catattctat agctggacgg aatgaagttt tcagcaataa acttataaat 6300 cataagcata tgaacatctt aaagtggttc aatcatgttt taaatttcag atcaacagaa 6360 ctaaactata accatttata tatggtagaa tctacatatc cttacctaag tgaattgtta 6420 aacagcttga caactaatga acttaaaaaa ctgattaaaa tcacaggtag tctgttatac 6480 aactttcata atgaataa 6498 // |
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