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EBI DbfetchID AAD56771; SV 1; linear; genomic RNA; STD; VRL; 5952 BP. XX PA AF147498.1 XX DE Snakehead rhabdovirus polymerase protein XX OS Snakehead rhabdovirus OC Viruses; ssRNA negative-strand viruses; Mononegavirales; Rhabdoviridae; OC Novirhabdovirus. OX NCBI_TaxID=103603; XX FH Key Location/Qualifiers FH FT source 1..5952 FT /organism="Snakehead rhabdovirus" FT /host="Ophicephalus struatus" FT /mol_type="genomic RNA" FT CDS AF147498.1:5490..11441 FT /codon_start=1 FT /gene="L" FT /product="polymerase protein" FT /db_xref="GOA:Q9QJT4" FT /db_xref="InterPro:IPR001016" FT /db_xref="UniProtKB/Swiss-Prot:Q9QJT4" FT /func_characterised="identical sequence" FT /protein_id="AAD56771.1" FT /translation="MEFFDLDLEVSQERLPAECSLNAPLNLSLSLQLFGRIEPKTENIR FT RQSRRITKVLRERHNGYRLQDLIIDSTRTQANLIPHLVSSASGDLNTPILEHWEMLSKY FT YQSLGYSLPSLDKFDFKESAGYWNAACSFRDMLLKSQKVEKKVNKQQTYVIYDITFEFV FT EGVVFIHGGEDGFNDGFLAGGAIAAMTYTELLALFKILNQRAQALLMCNISKGLEPDMV FT PSPSTIHSIYAEADHMLRMAGQGAIDLLKLWEPLVLTQLGDVLGDRFGLEDDFKLTIRT FT EAALLADQLNLKRSFARMTELIKSETRKQPLFQLFGLFKHFAYPRVYSRDTINTILGVS FT DKPSANDPEEYLHDQCEIRKEFYTRYVKAYHRAPQLDLGGLSPGSYLRRALEAGKMPNE FT KSPLYTNLEWFFVKFKKSIEWPLSDTLSTFLSDKAITQNRSTWLDNETSSRDNSEKRLL FT LKFIKENEDSVARVVAQAKEIYDNEDDRIIALKVKEMELKLKGRGFGLMTFKPRLLQVL FT RESIAKKTSKLFPEITMTASDLDLKKRKFLVSRKSDDRRGYVHMSKSLDINKFCTSQRQ FT FNSQAVFQCLDELLGTGALFSRVHEIFEKTWIVDGSASDPPNLKKFKDRYQKLKDLGID FT APHTWGDGVFSGLMGGIEGLCQYVWTICLLLRVERVLSKTSLTHFVMAQGDNVIINLII FT PIEIERDGSISPSEHRRVKSLSTSIDTQLAMELEKSGLTLKIEETLSSEHISIYGKDLH FT CPHHLTLSLKKAGSASIISSEQYQDVPTFLAGLSTSIETISECVNDKVSAHLFGVILAH FT AGWKSLCVSQTWKGWEYPYQKDETINRVRSQGIKLTEGEQVTVEKRLERNPDKRCLEWI FT LATSFLGSALGMLPFPTPVDLEKRGVGDYITHRLALTKKALSSRVLPRRIEKLIRSMVN FT LPHSRETDLAKLFDSPFSLNLATEEDATSVIKRLARSTLRDLDIKNERLRAHIDIMDRG FT LQDLDRELGDSETINPRVAHLIRDITDEKESEMFVTKFATARTMRTVALENPQDVSVVS FT LLNKKSRAKETYTIWRSKRAPAEDWECSTQRAKIERDSSWGKNVIGVTSPSPVEAMSYR FT LVDPSTWEEEKKDQDFTINYYLSKPSLISHQARLERGPLVPYYGTQTQPLIAKAYNELK FT GNPKTNKALMLLSLRETIVKSGSNLDKLIMRLCERALDLDLNTLPSLRAQEEASSGEGI FT RGGIKESMSPVGPDNFYTNITHKVFNRRWLSGFHINIADFIIWGLTCTRKSITTQGTLS FT GNLPICIPACRGCLRRKEREFLDIDNPPRWECKEGVKDKAYMYFTTWCDLPRLSTLPSL FT DPQDAVFMIGRQLACSKGQDSGAATKFYNVSPESLGLLHPRMLLLGYSEGLIFSYLRSQ FT HIVLGCLYHPTITELLPSLEKYTLETIDQHARQLGYLFQEEETAKELLNAGLCPYTPRA FT IPLTITELKNAVCITVSRSISVTLETKKSIHLMPESGISEEEVVAGRHAARTLGGLLNI FT KVPNLVYIDCDLTKGLLPWEPELPSEVLQSENFKIDGKRVTLYAKSQKRDNSIWEERGW FT TCSNSREILAKGVKTKSLFIHQSVPSHLDIDPALIVVIGGGLGGCVVPYLQHWRRPPVI FT FTTLFSERERISEDGDLIIPPELLVRGLSGRMVERELLEAELCDVTVPGNRKAIVDAVK FT RRIKPNESVLLIDEIENRGDAEDVLQQSISTLLQSLEKHCSLTSVHTIRESNVKHFTQR FT LNILRRGRYEANLFWNRYNRRDQYEALIVIPSESRMTECTFSVASVQAAFQKIDDGIEV FT EAKLEAHSWGLPELPPREKKILLGYVSSVFLKLGLVVIERHMSSTKLIDLLESAGPQMI FT SWEEKQTHRSWASTDSIKEKGVTQDRIMALLCFAWTLKGLKHGVWDTNMDAVVEKTVYI FT THGPRLCALDEKPRVQYAEFKLQSKKRVEDLKGYLGALLHLETFFPLGDR" XX SQ Sequence 5952 BP; 1749 A; 1378 C; 1485 G; 1340 T; 0 other; 49619127 CRC32; atggaatttt ttgatctgga cctcgaggtt tcacaagagc gccttccagc agaatgctca 60 ctgaatgctc ctctaaacct ttcattgtct ctccaactat ttgggagaat cgagccaaag 120 acggagaaca tcaggagaca atccagaagg attaccaaag tactcaggga aagacacaac 180 ggatacaggc tccaggattt aatcatagac tcaactagga ctcaggccaa cctaattccc 240 cacctggtta gctctgcctc tggtgacctc aacactccga tcttggagca ctgggaaatg 300 ttgagtaagt attaccagtc attagggtac tcacttccta gcctcgacaa gttcgacttc 360 aaagagtcag ctggatactg gaacgccgca tgttctttta gagacatgct cttaaaaagc 420 cagaaagtcg agaaaaaagt caataaacag caaacatatg tcatttatga tatcaccttt 480 gaatttgtgg agggtgtggt gttcatacac ggaggtgaag acgggtttaa tgacggtttc 540 ctggcaggag gagcaattgc agccatgacc tatactgagc tcttagctct atttaaaatc 600 ttgaatcagc gagcccaagc tctcttgatg tgtaacataa gcaaaggact tgaaccagac 660 atggtgccca gtccctccac tattcactcg atctatgcag aggctgacca catgctaaga 720 atggcgggac aaggtgccat cgatctacta aagctgtggg aacctctggt ccttactcaa 780 ttaggtgacg tactgggcga cagatttggg ctggaagacg acttcaaatt aactatcaga 840 acagaggcgg cgctgctcgc cgatcaattg aatctcaaga ggagcttcgc aaggatgact 900 gagctaatca agtcagagac acgcaagcag cctcttttcc agctattcgg attgttcaag 960 cactttgctt acccccgggt ttactcaagg gatactatca atactatctt gggggtcagt 1020 gacaaaccta gcgcaaatga cccagaggag tacctacatg accaatgtga gattcgaaag 1080 gaattctaca cgagatatgt caaggcatat caccgtgcgc cccaactgga cctgggagga 1140 ttaagtccag ggtcttacct gagaagagca ctggaggcag ggaaaatgcc gaatgaaaag 1200 agtcctttgt acacaaattt ggagtggttt tttgtgaaat tcaagaagag catcgagtgg 1260 cctctcagtg acacgctctc tacattcctc tctgacaagg caatcaccca aaataggagc 1320 acatggctgg acaacgagac gtcgtccaga gataattctg aaaaacgatt gctcctcaag 1380 ttcatcaaag aaaacgagga cagtgtcgca agggtcgttg cccaagccaa agaaatttac 1440 gacaatgaag acgacagaat aattgctctc aaagtcaaag aaatggagct gaaactcaaa 1500 ggtcgggggt ttggactaat gacgttcaag ccccgtctgc tccaagtttt aagagagagc 1560 attgcgaaga aaactagcaa actgttccca gaaatcacca tgactgcatc tgatctagat 1620 ctgaagaaaa ggaagttcct cgtatcccga aagagtgatg acaggagggg gtatgtgcac 1680 atgagtaaaa gccttgacat caataagttc tgcaccagcc agcgtcagtt caactcacag 1740 gcggtgtttc agtgcctgga cgagctactc ggaactggag cccttttttc acgagtccac 1800 gagatatttg agaagacttg gatcgtggac ggttcagcta gtgatcctcc caacctaaaa 1860 aagtttaagg atagatacca gaaactcaag gacttgggga ttgacgcacc acacacctgg 1920 ggagatggag tgttctccgg gctaatgggg gggatcgaag ggctgtgtca gtatgtctgg 1980 acaatttgtc ttttgttgag agtcgaacga gtgctctcca agacaagtct gacccacttc 2040 gtgatggcac agggagacaa tgttatcata aacttgatca tcccaattga gatcgagagg 2100 gatgggtcga tatcaccatc agaacatcgg agggtcaagt ccttgagtac ctcgattgac 2160 acccagcttg caatggagct tgagaaaagt ggattgacct tgaagataga agagacactc 2220 agcagtgagc acatctccat ttacggaaaa gacctccatt gtcctcatca cctaaccctg 2280 tccttgaaaa aggcaggatc cgcctccatt atctctagtg aacagtatca agatgtgccg 2340 acctttctag caggccttag caccagcata gagactatct ctgagtgtgt caacgacaaa 2400 gtcagtgccc acttatttgg ggtgatcctc gcacatgccg ggtggaagag cctctgtgtg 2460 agtcagactt ggaagggatg ggaatatccc tatcagaagg acgagacgat taacagggtt 2520 agaagtcaag gaatcaaact cacagaggga gagcaagtaa ctgtcgaaaa aagactagag 2580 cgaaatccag acaaacgatg ccttgaatgg attcttgcca ccagtttcct gggatcggcc 2640 ctcggaatgc tcccctttcc cactcccgta gatctagaga aacgaggtgt tggggactac 2700 atcacccata gacttgcact cacaaaaaag gcgctgagct ccagggttct ccctcgtaga 2760 atcgagaaat tgatccggtc catggtcaat ttacctcact caagggaaac tgacttggcg 2820 aagttgttcg attcaccctt ttcactgaac ttggcaaccg aggaagatgc aacgtctgtg 2880 ataaaaagac tggcccgatc cacgctccgg gacctggaca tcaaaaacga gcgacttcgt 2940 gcccacatcg atataatgga cagaggtctt caagaccttg atcgagagtt aggtgactct 3000 gaaaccatca atccaagggt ggcacacctc attcgggaca tcacagatga gaaggaatcg 3060 gagatgtttg tcaccaaatt tgccactgca aggacaatga ggacagtggc cttggagaat 3120 ccccaagatg tctcagttgt cagcttactc aacaagaaga gtcgagcaaa ggagacgtac 3180 acaatctgga gatcaaaaag agccccagca gaagactggg aatgctcgac tcaacgagca 3240 aaaatagaac gagactcttc atggggaaaa aatgtgatcg gtgtgacctc cccctcacct 3300 gttgaggcca tgagctatcg actagttgac ccgagcacct gggaggaaga gaagaaagac 3360 caggacttca caatcaatta ctatctctct aaacccagtc ttatttccca ccaggcaagg 3420 cttgaacgag gacctttagt gccttattat gggactcaga cgcagccact catagcgaag 3480 gcatacaacg aactaaaagg aaatccaaaa accaataagg cactcatgct cctcagcctc 3540 agagaaacta ttgtaaaatc aggatccaat cttgataagt tgataatgcg actctgtgag 3600 agggcgctag atctagacct taacacactc ccatccctgc gagcccagga agaggcgagc 3660 tcaggtgagg ggatcagagg agggatcaag gagtcaatgt cgcccgtcgg ccccgacaat 3720 ttctacacaa atatcactca taaggtgttc aatcgtcgtt ggttgagtgg ctttcatatc 3780 aatattgcag atttcatcat atggggactc acatgcacga gaaaatccat caccacgcag 3840 gggacactga gtgggaattt gccaatttgc atcccagcgt gcagaggatg cttgagacgg 3900 aaggagagag aattccttga cattgacaat ccaccgaggt gggagtgcaa agaaggagtc 3960 aaagataagg cctacatgta cttcactacc tggtgtgacc tcccaaggct gtctaccctt 4020 cctagtcttg acccgcagga cgctgtgttc atgattggga gacaactcgc ctgtagtaaa 4080 ggtcaagatt cgggggctgc aaccaagttc tataacgtct cccccgagtc cctaggactc 4140 ctacatccca gaatgctgtt attgggatac tcggaggggc tgatattcag ctacttaagg 4200 agccaacaca ttgtgctggg gtgtctctat catcctacga tcacagagct gcttccaagc 4260 ttagagaagt acacccttga gacaattgac cagcatgcgc gacaacttgg atacctgttt 4320 caagaggaag aaacggcaaa ggagctcttg aatgccggtc tctgccccta cacaccgcga 4380 gcgattcccc tgacaatcac ggagctaaaa aacgccgtct gcatcacagt cagccgttcc 4440 atctcggtca ctctggagac caaaaagtcg attcacttaa tgcctgagtc agggatttcg 4500 gaggaggagg ttgtagcggg gagacacgcc gcgagaactc taggtgggct cctgaacatt 4560 aaggtcccaa atttggtcta catcgattgt gatctcacga agggactcct cccctgggaa 4620 ccagaacttc catcagaggt gctgcaatca gaaaacttta aaattgatgg gaaacgagta 4680 actctttatg caaagagcca aaaaagagac aactcaatct gggaagaaag agggtggaca 4740 tgttccaact caagagagat cctggcgaaa ggggttaaaa ccaagtcgtt attcatccac 4800 cagagtgtcc cctctcacct tgacattgat ccggccctca ttgttgtgat tggagggggg 4860 cttggtggct gtgtggtccc ctaccttcaa cactggagaa gacccccagt gatcttcaca 4920 acacttttta gtgaacgaga gcgaatctca gaagacgggg acctgatcat accccctgaa 4980 ttgctagtta gaggcttgtc tggacgaatg gtagaacgag aactgttaga ggctgaactc 5040 tgtgatgtga cggtgcccgg caaccggaaa gccatagtgg atgcagtaaa gagaaggata 5100 aaacccaatg agagtgtgct actgattgat gagatcgaga atcgggggga tgcagaagac 5160 gtccttcagc aatccatcag cactcttttg cagtcattgg aaaaacactg ctccctgaca 5220 tctgtgcata ccatcaggga gagcaatgtg aagcacttta cccagaggtt gaacatcttg 5280 aggagagggc gatatgaggc aaatttattt tggaaccgtt acaacagacg tgatcagtat 5340 gaggccctca ttgtgattcc cagtgaatct aggatgacag agtgtacctt ctccgttgcg 5400 tctgtacagg ctgcgttcca aaagatagat gatggaattg aggtagaagc aaaactagaa 5460 gcccacagct ggggattgcc tgagcttccc cctcgagaga agaagattct gttgggatat 5520 gtctcatccg tattcttaaa gctggggttg gtagtgatag agaggcacat gagctcaact 5580 aaattgatcg atctacttga gtctgcggga ccgcagatga tctcatggga agagaaacaa 5640 acgcatagat cttgggctag cacagacagc atcaaggaaa agggagtgac acaagacagg 5700 atcatggcac ttctgtgctt cgcgtggact ctgaagggac ttaaacatgg ggtctgggac 5760 acgaacatgg atgcagtagt tgagaaaact gtctacataa cccacggacc aagactttgc 5820 gcacttgacg agaaacctcg agttcagtat gctgaattca agcttcagag caagaaaaga 5880 gtagaagatc ttaaaggata ccttggagcg ctccttcacc ttgagacctt cttcccgttg 5940 ggggatcgct ga 5952 // |
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