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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AAB53879; SV 2; linear; genomic DNA; STD; INV; 1709 BP.
XX
PA   U80032.1
XX
DE   Caenorhabditis elegans partial Phosphodiesterase protein 5
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
OX   NCBI_TaxID=6239;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1709
FT                   /organism="Caenorhabditis elegans"
FT                   /chromosome="I"
FT                   /strain="Bristol N2"
FT                   /mol_type="genomic DNA"
FT                   /clone="C32E12"
FT   CDS             join(U80032.1:<112..211,U80032.1:419..623,
FT                   U80032.1:668..816,U80032.1:965..1126,U80032.1:1184..1438,
FT                   U80032.1:1501..1587,U80032.1:1633..1786,
FT                   U80032.1:1997..2325,U80032.1:2371..2567,
FT                   U80032.1:2755..2825)
FT                   /codon_start=3
FT                   /gene="pde-5"
FT                   /locus_tag="C32E12.2"
FT                   /standard_name="C32E12.2"
FT                   /product="Phosphodiesterase protein 5"
FT                   /note="contains similarity to Pfam domains PF01590 (GAF
FT                   domain), PF00233 (3'5'-cyclic nucleotide
FT                   phosphodiesterase); coded for by the following C. elegans
FT                   cDNAs: OSTF082F3_1, OSTR082F3_1"
FT                   /db_xref="GOA:P91119"
FT                   /db_xref="InterPro:IPR002073"
FT                   /db_xref="UniProtKB/Swiss-Prot:P91119"
FT                   /db_xref="WormBase:WBGene00016328"
FT                   /func_characterised="similar sequence"
FT                   /protein_id="AAB53879.2"
FT                   /translation="EIHFYTQLDSTEKSIVNAVCTWAAATNYYSEVRKLQKHITCSFLK
FT                   PKQSFQLYTHKQEGSDGQDIHENIAKQRKLSNFLLDVARSIFHDIVSMDAVIIKVMNFA
FT                   QKLVDADRASLFLVDSKNAQIYARIFDVGTGDEEHVRVNSEGQKEIRFDMSKGIAGYVA
FT                   STGEGLNIENAYEDERFNADVDSKTGYTTKTILCMPILIRGIVIGVVQMVNKHDGVFTR
FT                   QDEDAFEIFAVYCGLALHHAKLYDKIRRSEQKYRVALEVLAYHSVCNADEVNKLKKIEI
FT                   NNRIVELETIDFNGMRLSELEKPLYAVYMFKTLFADTLRFDTEDLIRFVLTVRKNYRRV
FT                   AYHNWAHGWSVAHAMFATLMNSPDAFTKLEALALYVSCLCHDLDHRGKNNAYMKTMSTP
FT                   LASIYSTSVMERHHFNQTVTILQQDGHNILKSLSSEDYKKTLSLIKHCILATDLALFFS
FT                   NKAKLNVILDNNTFDINRQEHRLLTQAVMMTGCDLVASAKPWNIQTETVKVIFEEFYDQ
FT                   GDAERLSGKEPIPMMDRQQAHMLPQMQASRLHAWDLYALLRLNRANIPEKR"
XX
SQ   Sequence 1709 BP; 559 A; 332 C; 352 G; 466 T; 0 other; 4248711277 CRC32;
     ctgaaattca tttctatacg caactagatt cgacagagaa gtcaatagtc aatgctgttt        60
     gtacatgggc tgcggcaacc aactactatt cagaggtacg aaaactacaa aagcacatta       120
     cttgcagttt cctgaaacca aaacaatctt ttcagctcta cacccacaaa caagaaggtt       180
     ccgacggtca agatatccat gagaatatag caaaacaaag aaaactgtca aatttccttc       240
     tcgatgttgc aagatccata tttcacgaca ttgtatcaat ggatgcagtt atcattaaag       300
     tcatgaattt tgcacaaaaa ctggtggacg ctgatcgagc atctctcttc ctagtcgatt       360
     cgaagaacgc acaaatttac gcgagaatct ttgacgtcgg gactggagat gaggaacatg       420
     ttcgtgtgaa tagtgaagga caaaaggaaa taagattcga catgtcaaag ggaatagccg       480
     ggtacgtggc ttcaactgga gaaggattga atattgaaaa tgcatatgaa gatgagagat       540
     ttaatgcaga tgttgactca aaaactggat acacaacaaa aaccattctt tgtatgccaa       600
     ttttgataag aggaatagtg atcggagttg ttcaaatggt gaataaacat gatggagtat       660
     tcactagaca agacgaagat gcgtttgaaa tatttgcagt ctactgtggt ctggctcttc       720
     atcatgcaaa attgtatgat aaaatacgga gatccgaaca aaaatatcga gttgcattgg       780
     aagtattggc atatcatagt gtttgtaatg cagatgaagt gaataagcta aagaagattg       840
     agattaacaa tcgtattgta gaactcgaaa caattgattt caacggaatg agactatcag       900
     aattggagaa gccactctat gctgtttata tgttcaaaac tctatttgcc gatactttac       960
     ggttcgacac agaagatctg attcgtttcg tgttgacagt tcgaaaaaac tatcgccgag      1020
     ttgcctacca caattgggct cacggatggt ctgttgctca cgcaatgttt gccacactga      1080
     tgaacagtcc tgatgctttc accaaattgg aggcgttggc cctctacgtc tcatgcctct      1140
     gccatgatct agatcatcgt ggtaaaaaca acgcttatat gaaaacaatg tctactccat      1200
     tagcatcaat ctacagtact tctgtaatgg aacgacatca tttcaatcaa acagtcacta      1260
     ttctccaaca agacggtcat aatattctaa agtcattatc ttctgaggac tacaaaaaga      1320
     ctctgtcgct cataaaacat tgcattttgg caaccgattt ggcacttttc ttctctaata      1380
     aagcaaagtt aaatgtcatt ttggataaca acacatttga tatcaaccgg caggaacata      1440
     gacttctcac ccaagccgtt atgatgacag gatgcgactt ggttgcttct gctaagccat      1500
     ggaatattca aactgaaact gtcaaagtga ttttcgagga gttctatgat cagggagatg      1560
     ctgaacggct tagtggaaag gagccaattc caatgatgga caggcagcaa gctcatatgt      1620
     tacctcagat gcaggccagt cggcttcatg cgtgggatct gtatgccctg ctacgactta      1680
     atcgcgcgaa tattcccgaa aaacgataa                                        1709
//
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