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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AAB18317; SV 1; linear; genomic DNA; STD; INV; 1269 BP.
XX
PA   U64854.3
XX
DE   Caenorhabditis elegans Ornithine decarboxylase protein 1, partially
DE   confirmed by transcript evidence
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
OX   NCBI_TaxID=6239;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1269
FT                   /organism="Caenorhabditis elegans"
FT                   /chromosome="V"
FT                   /strain="Bristol N2"
FT                   /mol_type="genomic DNA"
FT                   /clone="K11C4"
FT   CDS             complement(join(U64854.3:17403..17915,
FT                   U64854.3:17963..18263,U64854.3:18321..18775))
FT                   /codon_start=1
FT                   /gene="odc-1"
FT                   /locus_tag="K11C4.4"
FT                   /standard_name="K11C4.4"
FT                   /product="Ornithine decarboxylase protein 1, partially
FT                   confirmed by transcript evidence"
FT                   /note="contains similarity to Interpro domains IPR000183
FT                   (Orn/DAP/Arg decarboxylase 2), IPR002433 (Ornithine
FT                   decarboxylase); coded for by the following C. elegans
FT                   cDNAs: OSTF153B2_1, OSTR153B2_1, OSTR153B2_2, yk170g8.3,
FT                   yk170g8.5, yk171c11.3, yk171c11.5, yk257a5.3, yk257a5.5,
FT                   yk266a11.3, yk266a11.5, yk267b4.5, yk337g11.3, yk337g11.5,
FT                   yk724b6.3, yk724b6.5, yk761f01.3, yk761f01.5, yk818e03.3,
FT                   yk818e03.5, yk848f11.3, yk848f11.5, yk871h08.3,
FT                   yk1004d01.3, yk1004d01.5, yk1012a06.3, yk1012a06.5,
FT                   yk1062b06.3, yk1062b06.5, yk1170a12.3, yk1170a12.5,
FT                   yk1318a10.3, yk1318a10.5, yk1333h02.3, yk1333h02.5,
FT                   yk1468h01.3, yk1468h01.5, yk1479b10.3, yk1479b10.5,
FT                   yk1501e04.3, yk1686a05.3, yk1686a05.5, yk1688b11.3,
FT                   yk1688b11.5, yk1721b08.3, yk1721b08.5, yk1744d02.3,
FT                   yk1744d02.5, CN798081, EC021835, EC028154, EC021847,
FT                   EC021855, EC024666, EC035682, CESAE02F, U03059"
FT                   /db_xref="GOA:P41931"
FT                   /db_xref="HSSP:1F3T"
FT                   /db_xref="InterPro:IPR002433"
FT                   /db_xref="UniProtKB/Swiss-Prot:P41931"
FT                   /db_xref="WormBase:WBGene00003844"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="AAB18317.1"
FT                   /translation="MISQFEIIGDNKIGVLPKQVDQLQMCRDIAASKDLQENDSSFMLV
FT                   DLDKIIERFQLWKRELPMIEPFYAVKCNTDLVLIRILASLGCGFDCASKDEIDIVMGTG
FT                   VSAERIIYANPCKTRSFIAHAMDRDVKMMTFDNPEELLKIAKLHPNAEMILRIAVSDPT
FT                   ATCPLNLKFGADPIIAAPQLLKTASEEGINVVGISFHVGSGCNDASAYRNALQHAKNLC
FT                   EIGEGLGFKMDIIDMGGGFPGAEHHNPFEKIAETIRDALDEFFPDTNKRLIAEPGRFFA
FT                   AGPFSLVANIIHATEVPASKITKDPKDCADHGYMYYINDGVYGSFNCILFDHAHPIGSP
FT                   LFDTDRNEKFMSTIWGPTCDSLDLVEDKKLMPKMNVGEWLYYPDMGAYTLAAATTFNGF
FT                   SKPVPMYVMSEEMWESIRDSTHV"
XX
SQ   Sequence 1269 BP; 338 A; 285 C; 294 G; 352 T; 0 other; 1759402983 CRC32;
     atgatttctc aattcgaaat tattggtgac aacaagattg gcgtgcttcc aaagcaagtt        60
     gatcaactcc aaatgtgccg tgacattgct gccagcaagg atttgcaaga aaatgactct       120
     tctttcatgc tcgttgacct tgataagatt atcgagagat tccagctttg gaagagagag       180
     ctcccgatga ttgagccatt ttatgcagtc aagtgcaaca ctgatttggt tcttattcgc       240
     attcttgcct ctctgggatg tggattcgat tgtgctagca aagatgaaat cgatattgtt       300
     atggggaccg gtgtttctgc ggaacgtatc atctatgcca acccatgcaa aacacgcagt       360
     tttattgctc acgcaatgga ccgtgatgtc aaaatgatga cttttgataa cccggaggaa       420
     cttcttaaaa ttgccaagct tcatccaaat gctgaaatga tcctccgcat tgctgtatct       480
     gacccaactg ctacgtgccc actcaatttg aagtttggag ccgacccaat tattgctgca       540
     ccacaacttc ttaagacggc ttccgaagag ggaattaatg ttgttgggat ttctttccac       600
     gttggatcgg gatgcaacga cgcatctgcc tacaggaatg ctcttcagca tgccaagaac       660
     ttgtgtgaga ttggagaagg gctcggattc aagatggata ttattgatat gggtggtgga       720
     tttccaggag ccgaacatca taacccattc gagaagattg ccgagacaat tcgtgatgct       780
     cttgatgagt tctttccaga caccaacaag cgcctgattg ctgaaccagg aagatttttc       840
     gcagccggtc cattttctct tgttgcaaac atcattcatg ccaccgaggt tcctgcttcc       900
     aaaatcacaa aggatccaaa agactgcgct gatcatggat acatgtacta catcaacgac       960
     ggagtctacg gatcgttcaa ctgcatcctc ttcgatcatg ctcatccaat cggatccccg      1020
     ctttttgaca ctgatcgcaa cgagaagttc atgtcaacaa tctgggggcc aacttgcgac      1080
     agtctagatc ttgtcgagga taagaagttg atgccaaaga tgaatgttgg agaatggctc      1140
     tactatccgg acatgggagc gtacactctt gccgctgcca ccacgttcaa tggattttcg      1200
     aagcctgtgc cgatgtatgt gatgagcgag gaaatgtggg agagcattcg tgactcaact      1260
     catgtttga                                                              1269
//
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