EBI Dbfetch
ID Z19598; SV 1; linear; genomic DNA; STD; PRO; 6449 BP.
XX
AC Z19598;
XX
DT 28-JUN-1995 (Rel. 44, Created)
DT 18-APR-2005 (Rel. 83, Last updated, Version 18)
XX
DE P.laminosum nrtA-Phl, nir-Phl, nrtB-Phl and nrtC-Phl genes
XX
KW ATP binding protein; nir-Phl gene; nitrite reductase; nrtA-Phl gene;
KW nrtB-Phl gene; nrtC-Phl gene; periplasmic protein.
XX
OS Phormidium laminosum
OC Bacteria; Cyanobacteria; Oscillatoriales; Phormidium.
XX
RN [1]
RP 1-5201
RA Merchan F.;
RT ;
RL Thesis (1993), Biochemistry and Molecular Biology, University of Basque
RL Country
XX
RN [2]
RC Revised by [4]
RA Merchan F.;
RT ;
RL Submitted (15-JAN-1993) to the EMBL/GenBank/DDBJ databases.
RL Merchan F., University of Basque Country, Bilbao, Vizcaya, SPAIN.
XX
RN [3]
RP 1-5201
RX DOI; 10.1007/BF00037030.
RX PUBMED; 7766873.
RA Merchan F., Kindle K.L., Llama M.J., Serra J.L., Fernandez E.;
RT "Isolation, sequence and expression in Escherichia coli of the nitrite
RT reductase gene from the filamentous, thermophilic cyanobacterium Phormidium
RT laminosum";
RL Plant Mol. Biol. 27(5):1037-1042(1995).
XX
RN [4]
RP 1-6449
RA Fernandez E.;
RT ;
RL Submitted (12-JAN-1996) to the EMBL/GenBank/DDBJ databases.
RL E.Fernandez, Biochemistry and Molecular Biology, University of Cordoba,
RL 14071-Cordoba, Spain, e-mail bb1feree@seneca.uco.es
XX
RN [5]
RP 1-6449
RX DOI; 10.1007/BF00021199.
RX PUBMED; 7647306.
RA Merchan F., Kindle K.L., Llama M.J., Serra J.L., Fernandez E.;
RT "Cloning and sequencing of the nitrate transport system from the
RT thermophilic, filamentous cyanobacterium Phormidium laminosum: comparative
RT analysis with the homologous system from Synechococcus sp. PCC 7942";
RL Plant Mol. Biol. 28(4):759-766(1995).
XX
FH Key Location/Qualifiers
FH
FT source 1..6449
FT /organism="Phormidium laminosum"
FT /strain="OH-1-p-Cl1"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:32059"
FT CDS 181..1713
FT /transl_table=11
FT /gene="nir-Phl"
FT /product="nitrite reductase"
FT /function="reduction of nitrite to ammonium"
FT /db_xref="GOA:Q51879"
FT /db_xref="InterPro:IPR005117"
FT /db_xref="InterPro:IPR006066"
FT /db_xref="InterPro:IPR006067"
FT /db_xref="UniProtKB/Swiss-Prot:Q51879"
FT /citation=[1]
FT /experiment="experimental evidence, no additional details
FT recorded"
FT /protein_id="CAA79655.1"
FT /translation="MTSTVPAETSLNKFEKLKSEKDGLAVKSELEDFARLGWEAMDETD
FT RDHRLRWMGVFFRPVSQGKFMLRMRIPNGILTSGQIRVLAEVVERYGEDGNADITTRPN
FT LQLRGIRLEDIPDIFRRFEQAGLTSIQSGMDNVRNITGSPVAGIDADELIDTRGLVRKV
FT QDMITNNGEGNPSFSNLPRKFNIAIAGCRDNSVHAEINDIAFVPAYKDGKLGFNVLVGG
FT FFSAKRCEAAVPLNAWVDPRDVVALCEAILIVYRITGCGANRQKSRLMWLIDEWGMDKF
FT RAEVEQQLGHPLQTAAPKDEILWDKRDHIGIHAQKKPGLNYVGLLVPVGRLYAPMFDLA
FT RIAEVYGDGEMRLTVERKRDHSRTCPMSSVASLLKEPLLEKFSVSPGLLVRSLVSCTGA
FT QFCNFALIETKNRAMALIRELESELELARPVRIHWTGCPNSCGQPQVADIGLMGTKVRK
FT DGKATEGVDLYMGGKVGKHAELGTCVQKGIPCDDLKPILRNLLIEHFGARPK"
FT RBS 1964..1969
FT CDS 1978..3306
FT /transl_table=11
FT /gene="nrtA-Phl"
FT /standard_name="NrtA"
FT /product="probable periplasmic protein"
FT /function="probably binds specifically nitrate"
FT /db_xref="InterPro:IPR006311"
FT /db_xref="InterPro:IPR017909"
FT /db_xref="UniProtKB/TrEMBL:Q51880"
FT /citation=[1]
FT /protein_id="CAA79656.1"
FT /translation="MSSLSRRKFIFTAGVTAGATILANGCSGGSSPSDTSSPAASAPLA
FT PAPVAAADTPEVTTAKLGFICPDGLAPLIIAKEKGLFAKYGMPDVEVLKQASWAVTRDN
FT LELGSGGGGIDGAHILTPMPYLMSAGTITKGNQKVPMNILARLNVNGQGICLANTYKDL
FT KIGTDSSPLKEAFAKAKAEKGEIKAAVTFPGGTHDLWMRYWLSAGGIDPDKDISTIVVP
FT PPQMVANIKVNNMETFCVGEPWPAQTVNQGLGYNAMTTGELWKDHPEKAFAMRADWVEQ
FT HPKAAKALLMAVQEAQIWCDDPANKEEMCQIVSGREWFKVPVEDILERSKGNFDLGVRQ
FT LENSPLLMKFWNDAASYPFKSHDLWFLTEDIRWGYLPADTDTKALVDAVNREDLWREAA
FT KAIGQEAAIPASTSRGVETFFDGVKFDPENPSAYLSALKLKKV"
FT RBS 3309..3313
FT CDS 3478..4317
FT /transl_table=11
FT /gene="nrtB-Phl"
FT /standard_name="hydrophobic protein"
FT /product="hydrophobic protein"
FT /function="probably traslocates nitrate through the
FT membrane"
FT /db_xref="GOA:Q51881"
FT /db_xref="InterPro:IPR000515"
FT /db_xref="InterPro:IPR005889"
FT /db_xref="UniProtKB/Swiss-Prot:Q51881"
FT /citation=[1]
FT /protein_id="CAA79657.1"
FT /translation="MTADLSSPRRARRSPSSYLGALVGKTIRRSIPTAIAFFVLLGIWQ
FT LLCSGENAACRPIQVVQESWDLIIDPFYRGSGTDQGLFWQIAASLQRVAVGYLMAAIAG
FT IALGILIGVSVLMFQALDPIFQVLRTVPPLAWLPISLAAFRDSQPAAIFVIFITAIWPI
FT IINTAVGVQNIPQDYNNVARVLKLSRLDYFLKVLLPATVPYIFTGLKIAIGLSWLAIVA
FT AEMLTGGVGIGFFIWDAYNSGSNSEVILAIIYVGLVGLLLNALVGFIASRVVPDEQK"
FT RBS 4316..4320
FT CDS 4432..6309
FT /transl_table=11
FT /gene="nrtC-Phl"
FT /product="ATP binding protein"
FT /function="Binds and probably hydrolizes ATP"
FT /db_xref="GOA:Q51882"
FT /db_xref="HSSP:1F3O"
FT /db_xref="InterPro:IPR003439"
FT /db_xref="InterPro:IPR003593"
FT /db_xref="InterPro:IPR005890"
FT /db_xref="InterPro:IPR017871"
FT /db_xref="UniProtKB/TrEMBL:Q51882"
FT /citation=[1]
FT /protein_id="CAA79658.1"
FT /translation="MLPFVEIDHVDQVFPLPGGGEYIALKNIDLTIRKGEFVSLLGHSG
FT CGKSTLLNIIAGLAKPAAGALILEGRQVTEPGPDRMVVFQNYSLLPWLTVRENIALAVN
FT RVMATASKSEREAIVEQHIDLVNLRHAADKRPGQLSGGMKQRVAIARALSIRPKLLLLD
FT EPFGALDALTRSSLQDQLMQIAEEHELTCIMVTHDVDEALLLSDRIVMLTNGPESYIGQ
FT IMDVPFERPRDRLEVVNDPSYYGMRSEIVYFLNQQKQAKKRKAALQVGAIARNGLEKVN
FT LELGFVPLTDCAPLVVAKELGFFEKYGLEQVTLSREPSWKAIAEDITSGRLDAAQMIAG
FT MPLALTLGMGGKALYPSPQASSSAATATRLRSSKRFLHDGVRTVEDLKAAIARTPDKVP
FT TMAVVHPASMHNLMTRHWLASGGIDPDRDVNIVTIPPPQMVAALKGGGIDGFCVGEPWN
FT SRAIQEGLGYAIAPCAQPVRHDDQRRGCGHFRQIQVNRERAIFLRRASANALGIHQPQR
FT LLLEGDGTGWRGSMGGRVCSRSDSVWANRLRRIDHPICHRGRSLQQPAQPPLKSDRLPD
FT IQLHIHWQMSQKAQHAEAVWVGRRQNARTPQAAGTVSPRSRPQQPAHLF"
XX
SQ Sequence 6449 BP; 1396 A; 1861 C; 1849 G; 1343 T; 0 other;
tcactcatac gaaacccttt ccctccagat agcgacctgt tcgtcaagtc tcctgagata 60
aaactttaga agtctgggcg actgtatcta aaagcaagtg gtttcgggat ttgcttcgca 120
atctgttctg aactttgttc cgaagcccgt tcacgtttct ctcatcaaag gtcttttgca 180
atgaccagta ccgttccagc agaaaccagt ctgaataagt ttgaaaagct caagtccgaa 240
aaagacggtc tggcggttaa gtctgaactg gaagactttg cccgtctggg ctgggaagcg 300
atggatgaaa ccgaccggga tcatcgcctg aggtggatgg gcgtgttttt tcgcccggta 360
agccagggta agtttatgct acggatgcgg attcccaatg gcattctcac cagtggccaa 420
attcgggttc tggcagaggt ggtcgagcgc tacggcgaag acggcaacgc cgacatcacc 480
acgcgcccaa acctccagct tcgcggcatt cggctagaag atattcccga catctttcga 540
cggttcgagc aggcggggct gaccagcatc cagtccggca tggacaatgt tcgcaacatc 600
acgggttcgc ccgtggcagg catcgatgcc gacgagctaa tcgacactcg cggactggtt 660
cgcaaggtgc aagacatgat caccaacaac ggcgagggca acccgtcgtt tagtaatctg 720
ccgcgcaagt tcaacattgc gatcgccgga tgccgcgata actcggttca cgccgagatc 780
aacgacatcg cctttgtgcc cgcctacaaa gacggcaagc tgggctttaa cgtactcgtc 840
ggcggattct tttcggccaa gcgctgcgaa gccgccgtgc cgctcaatgc ctgggtcgat 900
ccgcgagacg tggtggcgct gtgcgaagcc atcctgatcg tctatcgaat cacgggctgc 960
ggggccaacc gccaaaagtc tcgcctgatg tggctaatcg acgagtgggg tatggataag 1020
tttcgcgcag aggtggagca gcagttgggt cacccgctgc aaaccgccgc gcccaaagat 1080
gaaatcctct gggacaagcg cgaccacatc ggcatccacg cccaaaagaa gccagggctg 1140
aattacgtag ggctgctagt gcccgtcggt cggctctatg caccgatgtt tgacctagct 1200
cgcattgccg aagtctacgg cgacggcgaa atgcgtctga cggtcgaacg aaaacgtgat 1260
cattcccgca cgtgcccgat gtcctccgtt gcgtccttac tcaaagagcc gctgctagag 1320
aagttttcgg tgagtcccgg cttattagtg cgatcgctcg tttcctgcac cggggcccag 1380
ttctgcaatt tcgccctgat cgaaaccaaa aatcgagcga tggcgctgat tcgagaactg 1440
gaatccgagc tggaactcgc tcgccccgtc cgcatccact ggacgggctg ccccaactcc 1500
tgcggccagc cccaagttgc cgacattggt ctgatgggca ccaaagtccg caaagacggt 1560
aaagctaccg aaggcgtgga tctgtacatg ggcggcaaag tcggcaaaca cgccgaactc 1620
ggcacctgtg tccaaaaagg aattccctgc gatgacctca aacccatcct gcggaatctg 1680
ctgatcgaac actttggcgc aagaccgaaa tgaggggtta ggggtcaggt gtcaggggtt 1740
agggatgagc ctggccccgc tcctagtctt caaacttgaa tcaatcaggc tgaggaatca 1800
aagctgaatg agatttaagt gcgaacctgc ctgcacgcct aacccctaac ccctaacccc 1860
caaccctagc caagccagtt tctcaccgga tcttgacacc gggcgcaact ggtaggggat 1920
tttacatcca aaattggtca actgattacc ctaacctcaa cttggagaac gcaacctatg 1980
tctagtctct ctcgtcgcaa attcatcttc acggctggag tcaccgctgg ggcaacgatc 2040
ctagcgaatg gatgcagcgg tggctcttcg ccctcagata ccagcagccc cgccgccagc 2100
gctcccctgg cgcccgcacc agtggccgca gccgacacgc ccgaagtcac gactgccaag 2160
ctgggtttca tttgccctga cggactcgct ccactgatta ttgccaagga aaaaggccta 2220
tttgccaagt atggaatgcc cgacgtggaa gtgctaaagc aggcatcctg ggccgtcacc 2280
cgcgacaacc tagaactggg atcgggcggc ggcggcatcg atggggcaca catccttacg 2340
cccatgcctt atctgatgtc ggcaggtacg atcaccaagg gcaaccagaa agtgccgatg 2400
aatattctgg caaggctgaa tgtcaacggt caggggattt gtttggcaaa cacctacaag 2460
gatctaaaga ttgggacaga cagttcgccg ctgaaggaag cgtttgccaa ggcaaaagca 2520
gagaagggcg aaatcaaagc agccgtgacg tttcccggtg ggacgcacga cctgtggatg 2580
cgctattggc tgtcagcggg cggtattgat cccgacaagg atatttcgac catcgtggtg 2640
ccgccgcccc agatggtggc caacatcaag gtcaacaaca tggagacttt ttgtgtgggc 2700
gaaccctggc ccgcccaaac ggtgaaccaa ggtctcggct ataacgcaat gaccacgggt 2760
gaactttgga aagaccatcc tgaaaaggca tttgcgatgc gggccgactg ggtagagcaa 2820
catcccaagg cagcaaaggc gctgctaatg gcagtgcaag aggcccaaat ctggtgtgat 2880
gaccctgcca acaaggaaga aatgtgccag attgtatcgg gtcgcgagtg gttcaaggtt 2940
ccagtagagg acattctaga acgctcgaag ggtaattttg acctgggtgt gcgccagctt 3000
gaaaatagcc cgctgctgat gaagttttgg aatgatgcgg catcttatcc gttcaaaagc 3060
catgacctgt ggttcctgac agaagatatc cgctggggct atttgcctgc cgacaccgac 3120
accaaagcac tggtggacgc ggtgaaccgg gaagacctct ggcgcgaagc ggcgaaggcg 3180
atcggtcaag aagccgccat tcccgccagc acctcgcgtg gtgtggaaac cttctttgat 3240
ggagtcaagt ttgatcccga aaaccccagt gcttatctca gcgctctgaa gctcaagaaa 3300
gtctgagcag gaatcagggg ttaggggtta ggggttaggg gttaggtcgc aagccccgct 3360
tcgagatatg caaagtttgc ttactttgtc ttatcctact tgactcctaa tccctaattc 3420
ccaatcccta attcccaatc cctaattccc caacccctaa ttccccaact cctaatcatg 3480
acagccgacc tctcttctcc tcgccgcgct cggcgatcgc cctcttctta cttgggtgcg 3540
ctagttggta agacgattcg ccgctcaatt ccaacggcga tcgccttctt cgttctcctg 3600
ggcatctggc aactcctgtg ttcgggcgag aatgccgcct gcaggccgat ccaggtggtg 3660
caagaatcgt gggatctgat catcgacccg ttctatcgcg gtagcggcac cgatcagggc 3720
ctgttttggc agattgccgc gagcttgcag cgggtggcgg tgggttatct aatggcggcg 3780
atcgccggaa ttgcgctggg tatcttaatc ggcgtgagtg tgctcatgtt tcaggcgctc 3840
gacccgatct ttcaggtgtt gcgaaccgtg ccgccgctgg cctggctgcc catctccctg 3900
gccgccttcc gcgactctca gcccgctgcc attttcgtaa ttttcatcac cgccatctgg 3960
cccatcatca tcaacaccgc agttggtgta caaaacattc cccaggacta caacaacgtc 4020
gcccgcgtgc tgaagttgtc gcggctcgat tacttcctga aggtgctgct gcccgccact 4080
gtgccctaca tcttcacggg actcaagatt gcgattggct tatcctggct ggcgatcgtt 4140
gctgccgaaa tgctcacagg tggcgttggc atcggcttct ttatctggga tgcctacaac 4200
agcggtagca atagcgaagt gattctcgcc atcatctacg ttggtctagt cggtcttttg 4260
ctgaacgcgc tagtcggctt cattgcctcc cgtgtcgtac ccgacgaaca gaagtaggaa 4320
tcaggggtta ggggttaggg agggctttcc tttacttact ccagcatccg tcaccccaac 4380
acccttgccc tgtcactaca gcaccaattc atccttcatc cctcatccct catgctgcca 4440
tttgtagaaa ttgatcatgt agatcaggtg ttcccgctac cgggcggcgg cgaatacatt 4500
gcgctgaaga acattgacct gacgattcgc aagggcgagt ttgtctcgct gctgggtcat 4560
tcgggctgcg gcaaatcgac gctgctgaac atcattgcag ggttggcaaa accagcggcg 4620
ggcgcgttga ttttggaagg tcgtcaggtg acggagccgg gccccgaccg catggtggtg 4680
tttcaaaatt actcgctgct gccctggctg acggtgcgcg aaaacattgc cctggcggtg 4740
aaccgcgtca tggcgaccgc ctccaagtcg gagcgggaag cgattgtaga acagcatatc 4800
gacttagtga acctgcgcca cgcggcagac aagcgaccgg ggcagctctc tggcggcatg 4860
aagcagcgag tggcgatcgc ccgtgccctc tccattcgcc ctaaactctt gctgctggat 4920
gaaccctttg gggcgctaga tgccctcacc cgcagcagct tgcaagacca gttgatgcaa 4980
attgccgagg aacatgaact cacctgcatc atggtgacgc acgatgtgga cgaggcgctg 5040
ctgctgagcg atcgcattgt aatgctgacc aacgggccgg aatcctacat cgggcaaatt 5100
atggacgtgc cctttgagcg gccgcgcgat cgcctagagg tggtgaacga tcccagctat 5160
tacgggatgc ggagcgagat tgtctacttc ctgaatcagc aaaagcaggc gaagaagcgc 5220
aaggcggcgt tgcaggtggg ggcgatcgcc cgcaatggtc tggagaaggt gaacctggag 5280
ttgggctttg tgccgctgac ggactgtgcg ccgctggtgg tagccaagga actgggcttt 5340
tttgagaaat atgggctaga gcaggtgacg ctcagccgcg aaccaagctg gaaggcgatc 5400
gccgaagata ttaccagcgg ccgcctcgat gccgcgcaaa tgatcgccgg aatgcccctg 5460
gcgctgacgc tgggcatggg cggcaaagcc ctgtacccgt caccacaggc ctcgtcctca 5520
gccgcaacgg caacgcgatt acgatcaagc aagcgctttt tgcacgacgg cgtgcggacg 5580
gtggaagatt tgaaagcggc gatcgcccgc acgcccgaca aagtgcccac gatggcggtc 5640
gttcaccccg cttcgatgca caacctgatg acgcgccact ggcttgcctc cggcggcatc 5700
gaccccgata gggatgtaaa catcgtcacc atcccaccgc cgcaaatggt ggctgccctc 5760
aaaggcggcg gcattgacgg cttctgcgtg ggcgaaccgt ggaactcccg cgccattcag 5820
gaagggctgg gctatgcgat cgcgccgtgc gcccagcctg ttcgacacga cgatcagcgg 5880
cgcgggtgtg gacacttccg gcagatacag gtcaaccgtg agcgggcgat ttttcttcgc 5940
agggctagtg ccaacgcgct gggcatccac cagccgcagc gtttgttgtt ggaaggggac 6000
ggaaccgggt ggcgcgggtc gatgggcggc agggtttgca gcaggtcgga ttccgtttgg 6060
gcgaatcgcc tgcgtcgtat cgatcacccg atttgtcacc gaggccgttc gttgcagcag 6120
cccgcccagc cgccgctgaa aagcgatcgc ctgcccgaca tccagctgca tatccactgg 6180
caaatgtcgc agaaagctca gcacgctgaa gccgtctggg tcggccgccg ccaaaatgcc 6240
cgcactccgc aggctgctgg caccgtttcg cccagaagcc gtccgcagca gcctgcccac 6300
ctcttctagc agccgttccc ccgaccgcgt gtagctaaac tgcgacacca tcatcaagtc 6360
cacgtcgtag gtggcgttga gggtgttttg aagctgcgat cgctgatggg gcgcaagccg 6420
ccggagatag aagcggaggt gggggatcc 6449
//
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