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EBI Dbfetch
ID AK065980; SV 1; linear; mRNA; STD; PLN; 2148 BP.
XX
AC AK065980;
XX
DT 19-JUL-2003 (Rel. 76, Created)
DT 14-DEC-2008 (Rel. 98, Last updated, Version 4)
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DE Oryza sativa Japonica Group cDNA clone:J013049G01, full insert sequence.
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KW CAP trapper; FLI_CDNA.
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OS Oryza sativa Japonica Group
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade;
OC Ehrhartoideae; Oryzeae; Oryza.
XX
RN [1]
RP 1-2148
RA Adachi J., Aizawa K., Akimura T., Arakawa T., Carninci P., Doi K.,
RA Fujimura T., Fukuda S., Hanagaki T., Hara A., Hashizume W., Hayashida K.,
RA Hayashizaki Y., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Hotta I.,
RA Iida J., Iida Y., Ikeda R., Imamura K., Imotani K., Ishibiki J., Ishii Y.,
RA Ishikawa M., Itoh M., Kagawa I., Kanagawa S., Katoh H., Kawagashira N.,
RA Kawai J., Kawamata M., Kikuchi S., Kishikawa-Hirozane T., Kishimoto N.,
RA Kobayashi M., Kodama T., Kojima K., Kojima Y., Kondo S., Konno H.,
RA Kouda M., Koya S., Kurihara C., Kurosaki T., Kusumegi T., Li C., Lu M.,
RA Masuda H., Matsubara K., Matsuyama T., Miura J., Miyazaki A., Mizuno K.,
RA Murakami K., Murata M., Nagata T., Nakamura M., Namiki T., Narikawa R.,
RA Niikura J., Nishi K., Nomura K., Numasaki R., Ohneda E., Ohno M.,
RA Ohtsuki K., Oka M., Ooka H., Osato N., Ota Y., Otomo Y., Ryu R., Saitoh H.,
RA Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Sato K., Satoh K.,
RA Shibata K., Shinagawa A., Shiraki T., Shishiki T., Sogabe Y., Sugano S.,
RA Sugiyama A., Suzuki K., Suzuki Y., Tagami M., Tagami-Takeda Y., Tagawa A.,
RA Takahashi F., Takaku-Akahira S., Tanaka T., Tomaru A., Toya T., Tsunoda Y.,
RA Ueda M., Waki K., Xie Q., Yahagi W., Yamada H., Yamamoto M., Yasunishi A.,
RA Yazaki J., Yokomizo S., Yoshimura A.;
RT ;
RL Submitted (05-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences,
RL Department of Molecular Genetics, Head of Laboratory of Gene Expression;
RL 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
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RN [2]
RA Kikuchi S., Satoh K., Nagata T., Kawagashira N., Doi K., Kishimoto N.,
RA Yazaki J., Ishikawa M., Yamada H., Ooka H., Hotta I., Kojima K., Namiki T.,
RA Ohneda E., Yahagi W., Suzuki K., Li C., Ohtsuki K., Shishiki T., Otomo Y.,
RA Murakami K., Iida Y., Sugano S., Fujimura T., Suzuki Y., Tsunoda Y.,
RA Kurosaki T., Kodama T., Masuda H., Kobayashi M., Xie Q., Lu M.,
RA Narikawa R., Sugiyama A., Mizuno K., Yokomizo S., Niikura J., Ikeda R.,
RA Ishibiki J., Kawamata M., Yoshimura A., Miura J., Kusumegi T., Oka M.,
RA Ryu R., Ueda M., Matsubara K., Kawai J., Carninci P., Adachi J., Aizawa K.,
RA Arakawa T., Fukuda S., Hara A., Hashidume W., Hayatsu N., Imotani K.,
RA Ishii Y., Itoh M., Kagawa I., Kondo S., Konno H., Miyazaki A., Osato N.,
RA Ota Y., Saito R., Sasaki D., Sato K., Shibata K., Shinagawa A., Shiraki T.,
RA Yoshino M., Hayashizaki Y.;
RT "Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from
RT japonica Rice";
RL Science 301:376-379(2003).
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DR GOA; Q7XI75.
DR HSSP; 1OR8; Q63009.
DR UniProtKB/Swiss-Prot; Q7XI75; CARM1_ORYSJ.
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CC This clone is one of the 28K full-length cDNA clones from japonica
CC rice.
CC URL : http://cdna01.dna.affrc.go.jp/cDNA/
CC NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
CC Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
CC Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
CC Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
CC and Yamamoto,M.
CC FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
CC Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
CC Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
CC Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
CC Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
CC Yoshimura,A., Matsubara,K. and Murakami,K.
CC Genome Exploration Research Group in Riken Genomic Sciences Center
CC and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
CC Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
CC Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
CC Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
CC Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
CC Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
CC Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
CC Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
CC Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
CC Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
CC Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
CC Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
CC Yasunishi,A. and Hayashizaki,Y.
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FH Key Location/Qualifiers
FH
FT source 1..2148
FT /organism="Oryza sativa Japonica Group"
FT /cultivar="Nipponbare"
FT /mol_type="mRNA"
FT /clone="J013049G01"
FT /db_xref="taxon:39947"
FT CDS 145..1731
FT /note="(RAP Annotation release2) Similar to Arginine
FT methyltransferase-like protein"
FT /note="(Rice Genome Annotation Project) histone-arginine
FT methyltransferase CARM1, putative, expressed"
FT /note="mapping to R07-TIGRv4S1-001096F (Chr.7: short
FT arm=28400640, long arm=28407860, direction=forward) for
FT TIGR Pseudomol ver4"
FT /db_xref="GOA:B7EBL4"
FT /db_xref="InterPro:IPR007848"
FT /db_xref="UniProtKB/TrEMBL:B7EBL4"
FT /protein_id="BAG89761.1"
FT /translation="MASPDLFPNVSFSHVSVPAAAGASTEVTGGATAVFGGDASTGAPR
FT LSLVWSGETQAKHTLEIDLSDAQIFKLGPTEWLCVSGESEAKDGVEEKSYSRAIKVVLR
FT TEAESKAFYLAFQQWKHRVISGKAGEPLENGLIIGSKSKFDTKIEASSAKMYFHYYGQL
FT LHQQNMLQDFVRTGTYYAAVMENRSDFEGRVVVDVGAGSGILSLFAAQAGARHVYAVEA
FT SEMAEHAQRLISGNPSLGQRITVIKGKVEEVELPEKADILISEPMGTLLVNERMLESYV
FT IARDRFLVPGGKMFPTTGRIHMAPFSDEYLYVEMANKALFWQQHNFFGVDLTPLHGSAF
FT QGYFSQPVVDAFDPRLLVSPPTFHTLDFTTMKEEELYEIDIPLNFVASVGTRVHGLACW
FT FDVLFNGSTVQRWLTTAPGSPTTHWYQLRCILSQPLYVMAGQEITGRLHLVAHSAQSYT
FT IYLTMSAKMWGEGAEQGGILQTSTAKLELKEPYYRLSQPQPYVMQQDQQQQQLPSLQPQ
FT SPLWDYHYGQD"
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SQ Sequence 2148 BP; 547 A; 515 C; 544 G; 542 T; 0 other;
gttactccac ccacgcgtac aaacagcgag ctcctccacc ccgcgacgcc gcgcgcctcc 60
gcccaaaacc ctagccaccc cgcgtcgccc gcctcggcgc gcccaaaacc ctagggcatc 120
ccggatccga agctcccggc cccaatggcg tcgccggacc tgttcccgaa cgtctccttc 180
tcccatgtct ccgtccccgc cgccgcgggc gcgtcgacgg aggtcaccgg cggcgccacg 240
gccgtgttcg gcggggacgc gtccaccggg gccccgcgcc tcagcctcgt ctggtccggg 300
gagacccagg cgaagcacac gctcgagatc gatctctctg acgcgcagat atttaagctg 360
gggccgacgg agtggctgtg cgtgagcggc gagtcggagg ctaaggacgg tgtggaggag 420
aagtcatatt caagagcaat taaggttgtt cttaggacag aagctgagag caaagccttc 480
tatttagctt ttcaacaatg gaaacaccga gtgattagtg gaaaagctgg tgaacctttg 540
gaaaatggat taataattgg ttctaaaagc aaatttgata caaaaattga ggcctcatca 600
gcaaagatgt atttccacta ctatggccag ttattacatc agcaaaatat gttgcaagac 660
tttgtcagga caggaacata ctatgctgct gtaatggaaa atcgatccga ttttgagggt 720
cgagttgtgg ttgatgttgg agctggtagt ggcattcttt cattatttgc tgcacaggct 780
ggtgccagac atgtatatgc agttgaggca tctgaaatgg ctgaacatgc tcagcgtctt 840
atttctggaa acccatctct tggacaaaga ataacggtca tcaaaggcaa agttgaggaa 900
gttgaacttc cagagaaagc tgacatactt atttcggagc ctatgggaac cctcttggtg 960
aatgaaagga tgctggagtc ctatgttata gctagagaca gattccttgt gccaggtggt 1020
aaaatgtttc caacaactgg aaggattcat atggctccat tttccgatga atacctctat 1080
gttgaaatgg caaacaaggc tctcttctgg cagcagcata acttttttgg tgttgatctt 1140
acacctttgc atggttcagc attccagggg tatttttcac agcctgtggt ggatgcattc 1200
gatccaagat tattggtttc tccgcctacg tttcatacgc ttgatttcac taccatgaag 1260
gaagaggagc tttacgagat tgacattccc ctaaattttg tggcctctgt tggcactagg 1320
gtgcatgggc tagcttgttg gtttgatgta ttgttcaatg ggagcactgt ccagaggtgg 1380
cttaccactg ctccaggctc ccctacgact cactggtatc aactacgatg catactttca 1440
cagccattat atgtcatggc aggacaagaa ataacaggac gacttcatct ggtagcccac 1500
agtgcacaaa gctacacgat atacttgacg atgtcagcta aaatgtgggg tgagggggca 1560
gaacaaggtg gcatcctgca gacatccaca gccaaacttg aactcaagga gccatactac 1620
aggctgtctc aaccacaacc atatgtgatg caacaagacc agcagcagca gcagttacca 1680
tctttgcagc cacagagtcc tctctgggac tatcactacg gacaagatta gttgtctggc 1740
ctcagctatt gaacattggc aagaatagca gggatctgag cagcagatgc aagatggtct 1800
tagccctagt ataacgattg aaccagacca agactcggcg gccttcacta gatagctcgt 1860
aagccggagt tgcttcaggc aaacaactcc aggcctgtac aacagtatgc tcctacctga 1920
tgttgctagg cgttagctgt cagtggctaa cattgcattc gttgtgtacg agaggttgtg 1980
cagctgtagc taattgtgct cgtgtctgca ccgttattta aagggggtca aatacaataa 2040
gtgtatctgt ttgcaggaaa agctcaacga caaaggcgtc taactagaac gattgttgtg 2100
tatgttctta tgtattattg ttttatttaa tttaaaaatg gttggtcg 2148
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