EBI Dbfetch
ID AK145158; SV 1; linear; mRNA; HTC; MUS; 1973 BP.
XX
AC AK145158;
XX
DT 06-SEP-2005 (Rel. 85, Created)
DT 24-SEP-2008 (Rel. 97, Last updated, Version 10)
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DE Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN full-length
DE enriched library, clone:G930005O21 product:histone deacetylase 3, full
DE insert sequence.
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KW CAP trapper; HTC; HTC_FLI.
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OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC Muridae; Murinae; Mus.
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RN [1]
RP 1-1973
RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT ;
RL Submitted (30-MAR-2004) to the EMBL/GenBank/DDBJ databases.
RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL :http://www.osc.riken.jp/
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RN [2]
RX DOI; 10.1126/science.1112014.
RX PUBMED; 16141072.
RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG Science Group (Genome Network Project Core Group)
RA ;
RT "The transcriptional landscape of the mammalian genome.";
RL Science 309(5740):1559-1563(2005).
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RN [3]
RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG Network Project Core Group) and the FANTOM Consortium
RA ;
RT "Antisense Transcription in the Mammalian Transcriptome";
RL Science 309:1564-1566(2005).
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RN [4]
RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG I and II Team
RA ;
RT "Analysis of the mouse transcriptome based on functional annotation of
RT 60,770 full-length cDNAs";
RL Nature 420:563-573(2002).
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RN [5]
RX DOI; 10.1038/35055500.
RX PUBMED; 11217851.
RA RIKEN FANTOM Consortium;
RT "Functional annotation of a full-length mouse cDNA collection";
RL Nature 409(6821):685-690(2001).
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RN [6]
RX DOI; 10.1016/S0076-6879(99)03004-9.
RX PUBMED; 10349636.
RA Carninci P., Hayashizaki Y.;
RT "High-efficiency full-length cDNA cloning";
RL Meth. Enzymol. 303:19-44(1999).
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RN [7]
RX DOI; 10.1101/gr.145100.
RX PUBMED; 11042159.
RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT full-length cDNA libraries for rapid discovery of new genes";
RL Genome Res. 10(10):1617-1630(2000).
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RN [8]
RX DOI; 10.1101/gr.152600.
RX PUBMED; 11076861.
RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT pipeline with 384 multicapillary sequencer";
RL Genome Res. 10(11):1757-1771(2000).
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DR ASTD; TRAN00000143234.
DR Ensembl-Gn; ENSMUSG00000024454; Mus_musculus.
DR Ensembl-Tr; ENSMUST00000043498; Mus_musculus.
DR Ensembl-Tr; ENSMUST00000091933; Mus_musculus.
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CC cDNA library was prepared and sequenced in Mouse Genome
CC Encyclopedia Project of Genome Exploration Research Group in Riken
CC Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC Division of Experimental Animal Research in Riken contributed to
CC prepare mouse tissues.
CC Please visit our web site for further details.
CC URL:http://www.osc.riken.jp/
CC URL:http://fantom.gsc.riken.jp/
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FH Key Location/Qualifiers
FH
FT source 1..1973
FT /organism="Mus musculus"
FT /mol_type="mRNA"
FT /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT /clone="G930005O21"
FT /cell_line="RCB-0527 Jyg-MC(B)"
FT /tissue_type="mammary gland"
FT /db_xref="taxon:10090"
FT CDS 42..1328
FT /codon_start=1
FT /transl_table=1
FT /note="histone deacetylase 3 (MGD|MGI:1343091 GB|AF098295,
FT evidence: BLASTN, 98%, match=1932)"
FT /note="putative"
FT /db_xref="GOA:Q3UM33"
FT /db_xref="InterPro:IPR000286"
FT /db_xref="InterPro:IPR003084"
FT /db_xref="MGI:1343091"
FT /db_xref="UniProtKB/TrEMBL:Q3UM33"
FT /protein_id="BAE26265.1"
FT /translation="MAKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKM
FT IVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFC
FT SRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPR
FT VLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVP
FT LRDGIDDQSYKHLFQPVISQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVE
FT YVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHP
FT DVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDVPADLLTYDRTDEADAEERG
FT PEENYSRPEAPNEFYDGDHDNDKESDVEI"
FT polyA_signal 1955..1960
FT /note="putative"
FT polyA_site 1973
FT /note="putative"
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SQ Sequence 1973 BP; 476 A; 491 C; 482 G; 524 T; 0 other;
gggcgtgcag ctgaggctcg gggcctggtc cccccagcac catggccaag accgtggcgt 60
atttctacga ccccgatgtg ggcaacttcc actatggagc tggacaccca atgaaacctc 120
atcgcctggc attgactcat agcctagtcc tgcattatgg tctctataag aagatgatcg 180
tcttcaagcc ttaccaggcc tcccagcacg acatgtgccg cttccattct gaggactaca 240
tcgacttcct gcagagagtc agccccacca atatgcaggg tttcaccaag agccttaatg 300
ccttcaacgt gggtgatgac tgcccagtgt ttccaggact tttcgagttc tgctcccgtt 360
acacaggcgc atctctgcaa ggagcaacac agctaaacaa caagatctgt gatattgcca 420
tcaactgggc cggtggtcta catcatgcca agaaatttga ggcctctggc ttctgctatg 480
tcaatgacat agtaattggt atcctggagc tgcttaagta ccaccctcgg gtgctctaca 540
ttgatatcga catccaccat ggtgacgggg ttcaggaagc cttctacctc actgaccggg 600
tcatgactgt gtccttccac aaatacggaa attacttctt tcctggaaca ggtgacatgt 660
atgaagttgg agcagagagt ggccgctact attgtctcaa tgtgccctta cgagatggca 720
ttgatgacca gagttacaag caccttttcc agccagtcat cagccaggtg gtggacttct 780
accagccgac gtgcatcgtg ctccagtgtg gcgctgactc cctgggctgt gatcgattag 840
gctgcttcaa tctcagcatt cgaggacatg gggaatgtgt tgaatatgtc aagagtttca 900
atatccctct cctggtactg ggaggtggtg gctacactgt ccgaaatgtt gcccggtgtt 960
ggacatatga aacatctctg ctggtagaag aggccattag tgaggaactt ccctatagtg 1020
aatacttcga gtactttgcc ccagatttca cactccatcc agatgtcagc acccgcatcg 1080
agaatcagaa ctcacgccag tatctggacc agatccgcca gacaatcttt gaaaacttga 1140
agatgctgaa ccatgcaccc agtgtccaga ttcatgatgt cccggcagac ctcctgacgt 1200
atgacaggac tgacgaggcc gacgctgaag agagaggtcc cgaggagaac tacagcaggc 1260
cagaagcacc caatgagttc tatgatggcg accatgacaa cgataaggaa agcgatgtgg 1320
agatttagag cagcatggat gctgtgtgcc caagagttcc ttgtcacctc tgtggtgcga 1380
aggaaagtat ggtttcccca ggtctgaact gggtaccccc agggtgttta ctaactctgg 1440
tgaagggttt ggaaaccata tgtggttcta gaatcaactc ccctttctct caaactctca 1500
cggcctgatg attgtccctc tcagggatga gacatggaca ggtctctgga acgttatggg 1560
taatgagccc cagcagctgt ccccagcccc tcttcccctc atttgttcct tctgtccttc 1620
caacacagag actgttagag atgaaagttt ggacggtact aaagtcacct ctgacttcct 1680
tctgggttcc cctactacag ttcttgcttc catgcaaggt gaacctgagg ggaggaaggc 1740
gtggctctct gaaaccttaa ctgcagatga agtacagtgg caaggaggag agggtgtgaa 1800
gctctaactg gctttatgtc cattttactg ttttggatct aataaaccaa ttggtttttt 1860
tttttttttt tttttttttt gtacctttct gggattttaa ttcttgctag ttaccgatgt 1920
atgatgtgaa aaggaaacag atgatgatgt gtataataaa attgttacca ttc 1973
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