EBI Dbfetch
ID DQ241785; SV 1; linear; genomic DNA; STD; PRO; 2760 BP.
XX
AC DQ241785;
XX
DT 09-NOV-2005 (Rel. 85, Created)
DT 09-NOV-2005 (Rel. 85, Last updated, Version 1)
XX
DE Bacillus subtilis isolate DV3-D-2 quorum-sensing gene locus, partial
DE sequence.
XX
KW .
XX
OS Bacillus subtilis
OC Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus.
XX
RN [1]
RP 1-2760
RA Sabotic J., Cepon U., Cadez P., Mandic Mulec I.;
RT "Variability of Bacillus sp. quorum sensing system";
RL Unpublished.
XX
RN [2]
RP 1-2760
RA Sabotic J., Cepon U., Cadez P., Mandic Mulec I.;
RT ;
RL Submitted (14-OCT-2005) to the EMBL/GenBank/DDBJ databases.
RL Department of Food Science and Technology, Biotechnical Faculty, University
RL of Ljubljana, Jamnikarjeva 101, Ljubljana 1000, Slovenia
XX
DR StrainInfo; 684331; DV3-D-2.
XX
FH Key Location/Qualifiers
FH
FT source 1..2760
FT /organism="Bacillus subtilis"
FT /isolate="DV3-D-2"
FT /mol_type="genomic DNA"
FT /note="group W23"
FT /db_xref="taxon:1423"
FT misc_feature 1..>2760
FT /note="quorum-sensing gene locus"
FT gene 1..840
FT /gene="comQ"
FT CDS 1..840
FT /codon_start=1
FT /transl_table=11
FT /gene="comQ"
FT /product="ComQ"
FT /note="pre-ComX modifying enzyme"
FT /db_xref="GOA:Q8VLM0"
FT /db_xref="InterPro:IPR008949"
FT /db_xref="InterPro:IPR017446"
FT /db_xref="UniProtKB/TrEMBL:Q8VLM0"
FT /protein_id="ABB51993.1"
FT /translation="MKEIVHEKIQNLDLKEYLINFIDEKNHFSFGILSFKHYVALSGNR
FT SSHILTLAGGIELLILAFDIFDDLEDEDNIEIKWMKIDPSLALNAATTLYTLGLETICS
FT ISNSAEFHRLTLKYALNAMQGQHEDLRNSPETEEECIQMMKQKAGSLTAMSAVLAAMLA
FT NGEFNQTIEDYAYKIGIIKQLENDYYGLVNDQRSDIRKKRKTLIYLFLNRKFNEASEKI
FT LKLINSHTSYHSFISDSSKFDELLFEAGLNQYVSMLIKLYEEEITASMNQLNINIKL"
FT gene 855..1031
FT /gene="comX"
FT CDS 855..1031
FT /codon_start=1
FT /transl_table=11
FT /gene="comX"
FT /product="pre-ComX"
FT /note="ComX pheromone precursor"
FT /db_xref="GOA:Q8VL79"
FT /db_xref="InterPro:IPR009233"
FT /db_xref="UniProtKB/Swiss-Prot:Q8VL79"
FT /protein_id="ABB51994.1"
FT /translation="MKQDMIDYLMKNPQVLTKLENGEASLIGIPDKLIPSIVDIFNKKM
FT TLSKKCKGIFWEQ"
FT gene 1051..>2760
FT /gene="comP"
FT CDS 1051..>2760
FT /codon_start=1
FT /transl_table=11
FT /gene="comP"
FT /product="ComP"
FT /note="histidine kinase sensor protein"
FT /db_xref="UniProtKB/TrEMBL:Q306U2"
FT /protein_id="ABB51995.1"
FT /translation="MKNLKRNFSIVLVLFSLLYFAYIVYFTQNGILVGTYVSETANHEL
FT KVEKMTKATYGKYMGLKEGDLILEVSGKKPTSENIKRNYLAKAEHLKVKRDNHEIQLHN
FT TEYISLNNSYSFFIYIIPCIFFALSLLCAFYIYRVNRVKNTYSAYILINFLLFISIAYL
FT SAGGVTRGYEINRYINLFTFLNVPVLYLHFLYQYFKELSIKFSSRYIVNILYTLPIINV
FT IIEFIQKYLSSGIITNISNINLVTFLIEITVVYFCIIYYGIIYRKKDHYYLLKVLLISN
FT TVAFFPFTVLYIMPEVLFGQYIYSAIVTAPFLIIIPLALVYQFVVNKIYDIDFILGRIR
FT YYSLLSIIPTIGIVWLSIIFDSKRADFNIILITLCTFIIFLSVFYIKELLDYKFRLKRF
FT SEKYNYQDSIFKYTQLIKGVSALDQVFKNLKTTILEVLPVSKAYIFEVGADREIIYFDK
FT QSVEPNWRLYKTEFEKVTKEIGKIIEINQGFLIKVGEKGTSSYVLLCLSSINTPRLTRD
FT EISWLKTLSFYTSVSMENVVQIEELMDHLQALKREDANPVWLKKLMYTIEEKQ"
XX
SQ Sequence 2760 BP; 993 A; 352 C; 463 G; 952 T; 0 other;
atgaaggaga ttgtacacga aaaaattcag aatttggatt tgaaagagta tttaatcaac 60
tttatcgatg agaaaaatca cttttctttt ggtatccttt cttttaagca ttacgtagca 120
ttaagcggta atcgttcttc gcatatttta acattggcag gaggaataga acttttaatc 180
ttagccttcg atatatttga tgatttagag gatgaggaca acattgaaat aaaatggatg 240
aaaattgatc cttctctcgc tctaaatgct gcaactaccc tttatacttt agggttagaa 300
actatttgtt ctattagcaa tagcgctgaa tttcatcggc taactttaaa atatgcatta 360
aatgctatgc agggacaaca tgaggattta aggaactctc ctgagacgga agaagaatgt 420
attcaaatga tgaaacaaaa agcaggttct cttacagcta tgtctgccgt tttagctgct 480
atgcttgcga atggagagtt taatcaaact attgaggatt atgcttataa gatagggata 540
ataaaacaat tggaaaatga ctattatggt ttagttaatg atcaacgtag tgatataaga 600
aaaaaaagaa agactttgat ttatttattt ttaaaccgca aatttaatga ggcttctgaa 660
aagatattaa aattaataaa ttctcatact agttatcata gttttatatc tgatagctct 720
aaatttgatg aattattatt tgaagcgggg cttaatcaat atgtatctat gctgattaag 780
ctttatgagg aagaaatcac agcaagcatg aatcaattaa atataaatat aaagttataa 840
agaggggtat acttatgaaa caagacatga ttgattactt aatgaagaat ccgcaagttt 900
taactaaatt agaaaatgga gaggcgagct taataggaat tccagataaa ctaatccctt 960
caattgtaga tattttcaac aaaaaaatga ctctctcaaa gaaatgcaag ggaattttct 1020
gggagcaata attcagagag aagtggtcta ttgaaaaacc ttaaaagaaa tttttctata 1080
gtgctagtat tatttagtct cttatatttt gcttatattg tttatttcac tcagaatggt 1140
atcttagttg gtacttatgt ttctgaaaca gccaatcatg agttaaaagt tgaaaaaatg 1200
actaaagcca catatggaaa atatatgggc ttaaaagaag gcgacttaat actcgaggta 1260
agtgggaaga aacctacaag tgagaatatt aaaagaaatt atttagcaaa agctgaacat 1320
ttaaaagtta aaagggataa tcatgaaatt caattacata atacggagta tatctcttta 1380
aataattctt atagcttttt catttatatt atcccttgta tattttttgc tttgagtctg 1440
ttatgtgcat tttatattta tagggtcaat cgagtaaaaa atacgtactc ggcttatatt 1500
ttgattaatt ttttgctgtt tatatctata gcatatttaa gtgctggagg cgtaactaga 1560
gggtatgaaa taaatagata tattaatctt tttacctttt taaatgtacc tgtcttgtat 1620
ttgcattttc tatatcaata tttcaaagaa ttaagcatca aattttcatc acgttatatc 1680
gtgaatattt tatacacgtt gccaattatc aatgtaataa tagaattcat ccagaaatac 1740
ctttcttcgg ggattattac gaatattagt aatattaatt tagtaacatt cttaatagag 1800
attacagttg tttatttttg cattatctat tatgggataa tttatagaaa aaaggatcat 1860
tattatttgt tgaaggtatt attgatttca aatacggtag ctttctttcc ttttacggtc 1920
ttatatatca tgccggaagt tttatttggg caatatattt actcagcaat agtgactgcg 1980
ccattcttaa taattatccc attagcattg gtttatcaat tcgttgtaaa taaaatttat 2040
gatatagact ttatactagg cagaattaga tattatagtt tattatccat cataccaaca 2100
ataggcatag tatggttgtc aataatattt gatagcaaaa gagcggattt taatatcatc 2160
ttaattacgt tatgtacgtt cataattttt ctgtcggtct tttatattaa agaattactg 2220
gactataaat ttcggttaaa acgattttcg gaaaaatata attatcaaga cagtatattt 2280
aaatatacgc aattaattaa aggtgtatca gctttagatc aagtatttaa gaacttaaaa 2340
acaacaatac tagaagttct acccgtaagt aaagcctaca tctttgaagt tggtgctgat 2400
agagaaatca tatactttga taaacagagt gttgaaccca actggaggct atataaaaca 2460
gaatttgaaa aggtcactaa agaaataggg aagattattg agattaacca aggctttttg 2520
atcaaagtag gggaaaaagg tacgagttct tatgtattgc tttgtttatc tagcatcaat 2580
acaccaaggt tgacaagaga tgaaatttca tggctgaaaa cattatcgtt ttatactagt 2640
gtatccatgg aaaatgttgt acaaattgaa gaactcatgg atcatttaca agctttaaaa 2700
agggaagatg ctaaccccgt atggctcaaa aaactcatgt acacgatcga agaaaaacaa 2760
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