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EBI Dbfetch
ID BC129195; SV 1; linear; mRNA; STD; VRT; 2413 BP.
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AC BC129195;
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DT 03-JAN-2007 (Rel. 90, Created)
DT 21-OCT-2008 (Rel. 97, Last updated, Version 4)
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DE Danio rerio zgc:158305, mRNA (cDNA clone MGC:158305 IMAGE:6969284),
DE complete cds.
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KW MGC.
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OS Danio rerio (zebrafish)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
XX
RN [1]
RP 1-2413
RX DOI; 10.1073/pnas.242603899.
RX PUBMED; 12477932.
RG Mammalian Gene Collection Program Team
RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT "Generation and initial analysis of more than 15,000 full-length human and
RT mouse cDNA sequences";
RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN [2]
RC NIH-MGC Project URL: http://mgc.nci.nih.gov
RP 1-2413
RG NIH MGC Project
RA ;
RT ;
RL Submitted (22-DEC-2006) to the EMBL/GenBank/DDBJ databases.
RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL MD 20892-2590, USA
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DR Ensembl-Gn; ENSDARG00000007371; Danio_rerio.
DR Ensembl-Gn; ENSDARG00000010137; Danio_rerio.
DR Ensembl-Gn; ENSDARG00000013881; Danio_rerio.
DR Ensembl-Gn; ENSDARG00000032458; Danio_rerio.
DR Ensembl-Gn; ENSDARG00000055754; Danio_rerio.
DR Ensembl-Gn; ENSDARG00000070870; Danio_rerio.
DR Ensembl-Gn; ENSDARG00000074556; Danio_rerio.
DR Ensembl-Gn; ENSDARG00000077773; Danio_rerio.
DR Ensembl-Tr; ENSDART00000002698; Danio_rerio.
DR Ensembl-Tr; ENSDART00000005329; Danio_rerio.
DR Ensembl-Tr; ENSDART00000015773; Danio_rerio.
DR Ensembl-Tr; ENSDART00000033018; Danio_rerio.
DR Ensembl-Tr; ENSDART00000040424; Danio_rerio.
DR Ensembl-Tr; ENSDART00000075564; Danio_rerio.
DR Ensembl-Tr; ENSDART00000078148; Danio_rerio.
DR Ensembl-Tr; ENSDART00000104395; Danio_rerio.
DR Ensembl-Tr; ENSDART00000109532; Danio_rerio.
DR ImaGenes; IMAGp998P1914616Q.
DR ImaGenes; IRAKp961H22293Q.
DR ImaGenes; IRBOp991H0478D.
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CC Contact: MGC help desk
CC Email: cgapbs-r@mail.nih.gov
CC Tissue Procurement: Dr. Chi-Bin Chien
CC cDNA Library Preparation: Invitrogen Corp
CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC Center, Stanford University School of Medicine, Stanford, CA 94305
CC Web site: http://www-shgc.stanford.edu
CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu
CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC R. M.
CC Clone distribution: MGC clone distribution information can be found
CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC Series: IRAK Plate: 293 Row: h Column: 22
CC This clone was selected for full length sequencing because it
CC passed the following selection criteria: matched mRNA gi:
CC 113865946.
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FH Key Location/Qualifiers
FH
FT source 1..2413
FT /organism="Danio rerio"
FT /lab_host="DH10B"
FT /mol_type="mRNA"
FT /clone_lib="NCI_CGAP_ZEmb3"
FT /clone="MGC:158305 IMAGE:6969284"
FT /tissue_type="Embryo, zebrafish whole embryo 72 hpf"
FT /note="Vector: pCMV-SPORT6.1"
FT /db_xref="taxon:7955"
FT gene 1..2413
FT /gene="zgc:158305"
FT /note="synonym: pi4kII beta"
FT CDS 164..1669
FT /codon_start=1
FT /gene="zgc:158305"
FT /product="zgc:158305"
FT /db_xref="GOA:Q49GP5"
FT /db_xref="InterPro:IPR000403"
FT /db_xref="UniProtKB/Swiss-Prot:Q49GP5"
FT /db_xref="ZFIN:ZDB-GENE-070112-990"
FT /protein_id="AAI29196.1"
FT /translation="MMAECDPTDGEPGNGSGDSTPETNFLSSEVPAVLFEKTRSAPSLG
FT LSLNPGAAVRISDSTESVLTELEADGSGEEALLLPGPAGSLSPRAGKEKRTRRNMLSSS
FT SDNLASPGNSSGEFNHFPEDPEFGEIIQRAEQAIENGVFPERISQGSSGSYFVKDPKGK
FT IIGVFKPKSEEPYGHLNPKWTKYFHKVCCPCCFGRGCLIPNQGYLSEAAASLVDQKLGL
FT WIVPKTKVVHLASETFHYNAIDRAKSRGKKYALEKVPKVGRRFHRVGLPPKVGSFQLFV
FT EGYHEADFWLRKFEAEPLPENMRKQLQSQFERLVVLDYVIRNTDRGNDNWLIKYEKPGD
FT GELTEKESEWTDPKDSAIKIAAIDNGLAFPFKHPDEWRAYPFHWAWLPQAKVAFSQETR
FT DLVLSRISDMNFVQDLCEDLYEMFRTDKGFDKTMFEKQMSVMRGQILNLTQALKDGKSP
FT IQLVQMPRVVVERSRSGGQGRVVQLGNAFTQTFHCKRPFFTSW"
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SQ Sequence 2413 BP; 731 A; 488 C; 598 G; 596 T; 0 other;
gtgacggatg atgtggacgt gaaacggttg agagcatcag cgtgtcttca aggaagagga 60
aaaaaacata taaactcttt aagacggact cacggatatg acgcgggtat tttgagaggt 120
gtctgagttt ctctggacac agaccgaaca cgcactgtcc acgatgatgg cagaatgcga 180
ccccaccgac ggcgagccgg ggaacggcag cggagattca acaccggaga cgaactttct 240
ctcttcggag gtgccggctg tgttatttga aaaaacccgg tcggcaccgt cgttgggact 300
ctcgttgaac cccggagcag ctgtccggat ttcggactcg acggaaagcg tgttgacgga 360
gctggaagct gacgggtccg gcgaagaggc gctcctgtta ccgggaccag ccgggagcct 420
ctcacctcga gctggaaaag agaaaaggac acggaggaac atgctcagct catcatccga 480
taatctagca tctccaggta atagcagtgg agaattcaac catttcccag aagacccaga 540
gttcggggag attatccaga gggccgaaca ggccatagaa aacggcgtct ttcctgaacg 600
catctcacaa ggatctagtg gaagttactt tgtcaaggat cctaaaggga aaatcattgg 660
ggtattcaaa ccaaaatcag aggagcctta tggtcactta aacccaaaat ggaccaaata 720
cttccataag gtttgctgcc cgtgctgttt tggccgtggc tgcctcattc ccaatcaggg 780
ctacctctct gaggcagctg cctcacttgt ggaccaaaaa ctgggtttgt ggattgtacc 840
caaaactaag gttgtacatt tggctagcga gacttttcac tataatgcaa ttgaccgtgc 900
caaatcccgt ggtaagaaat atgcacttga gaaagtcccc aaagttggac gacggtttca 960
cagagttggc cttcctccaa aggtgggctc atttcagctg tttgtggagg gctatcatga 1020
agctgacttc tggctgagga agtttgaagc agagcctctt ccagagaaca tgaggaaaca 1080
gctgcagtct cagtttgaga ggctggttgt tttggattac gttattagaa acacagacag 1140
agggaatgat aactggttga tcaagtatga gaagccgggc gatggagagc tgacagagaa 1200
ggaatctgag tggactgatc caaaagactc ggccataaaa attgcagcta tagataatgg 1260
tttggccttc ccctttaaac atcctgatga gtggagagca tatccgttcc actgggcttg 1320
gttgcctcag gccaaagtgg ccttttccca ggagacccga gaccttgtgc tatctcgcat 1380
ttccgatatg aactttgtac aggacctctg tgaggacctt tatgagatgt tcaggacgga 1440
taaaggattc gacaaaacca tgtttgagaa acagatgtcc gttatgagag gacagatctt 1500
aaacctgaca caggctttga aagatgggaa gagcccgatc cagctagtgc agatgcctcg 1560
tgtggtggtg gagcggagcc gcagtggggg ccagggccgc gtggttcagc taggtaacgc 1620
tttcactcag acatttcact gcaagagacc cttcttcacc tcctggtaaa agagctgcac 1680
agacagaacc agtttacatg gactacagtc ttaaaccgga ctaaggtgag tttcagacac 1740
tggatggaga actttcagat gaagatttcc agggtgaatc gtagcaaagt gagacacttg 1800
caggactgca catggagaat ctgaggcctt tcgttttcct gagccttttc tcagtttctc 1860
tggatggatt gtctaaaggg aatcaatcaa atgttgaaaa tgctgaagtt tttgtgtgcg 1920
acagcctttc tcaactgcca attgttttat aagtataact atagatctta ttaatgaaga 1980
atgatgcatt cagattaatt taaacttgaa aataaacaat gcttgaatgt aacttgcaag 2040
tttacatttt acacttcaca tttcaacacc aaggagcact ggtgaccgcg gtatttaata 2100
tgatgaatgt atttgctggt tgtgtaacag gacatgcgtt tgttaaaggc gggagctttt 2160
aagcccctgt tgaaagtgta attccaaaag gtttttaatt ctttttctct tgttctctat 2220
cacgcaatcc tgtgtatgca tcttggactt tgtattccag cctaacggtt gtttaagtag 2280
agcggtatat ttaaagtgaa taaaaaaata aagctttgag atttcaaaaa aaaaaaaaaa 2340
aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2400
aaaaaaaaaa aaa 2413
//
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