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EBI Dbfetch
ID BC126071; SV 1; linear; mRNA; STD; ROD; 1480 BP.
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AC BC126071;
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DT 06-NOV-2006 (Rel. 89, Created)
DT 06-NOV-2006 (Rel. 89, Last updated, Version 1)
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DE Rattus norvegicus FK506 binding protein 1a, mRNA (cDNA clone MGC:156543
DE IMAGE:8363608), complete cds.
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KW MGC.
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OS Rattus norvegicus (Norway rat)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC Muridae; Murinae; Rattus.
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RN [1]
RP 1-1480
RX DOI; 10.1073/pnas.242603899.
RX PUBMED; 12477932.
RG Mammalian Gene Collection Program Team
RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT "Generation and initial analysis of more than 15,000 full-length human and
RT mouse cDNA sequences";
RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN [2]
RC NIH-MGC Project URL: http://mgc.nci.nih.gov
RP 1-1480
RG NIH MGC Project
RA ;
RT ;
RL Submitted (19-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL MD 20892-2590, USA
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DR Ensembl-Gn; ENSRNOG00000008822; Rattus_norvegicus.
DR Ensembl-Tr; ENSRNOT00000012608; Rattus_norvegicus.
DR Ensembl-Tr; ENSRNOT00000032080; Rattus_norvegicus.
DR ImaGenes; IMAGp998E1418157Q.
DR ImaGenes; IRAKp961M12290Q.
DR ImaGenes; IRBPp993A0852D.
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CC Contact: MGC help desk
CC Email: cgapbs-r@mail.nih.gov
CC Tissue Procurement: Howard J. Jacob
CC cDNA Library Preparation: Express Genomics
CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC Center, Stanford University School of Medicine, Stanford, CA 94305
CC Web site: http://www-shgc.stanford.edu
CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu
CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC R. M.
CC Clone distribution: MGC clone distribution information can be found
CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC Series: IRAK Plate: 290 Row: m Column: 12
CC This clone was selected for full length sequencing because it
CC passed the following selection criteria: matched mRNA gi: 47271543.
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FH Key Location/Qualifiers
FH
FT source 1..1480
FT /organism="Rattus norvegicus"
FT /lab_host="DH10B"
FT /mol_type="mRNA"
FT /clone_lib="NIH_MGC_365"
FT /clone="MGC:156543 IMAGE:8363608"
FT /tissue_type="Brain, 15 day embryo pool, mixed sex, strain
FT BN/NHsdMcwi"
FT /note="Vector: pExpress1"
FT /db_xref="taxon:10116"
FT gene 1..1480
FT /gene="Fkbp1a"
FT /note="synonyms: Fkbp2, FKBP12"
FT CDS 32..358
FT /codon_start=1
FT /gene="Fkbp1a"
FT /product="FK506 binding protein 1a"
FT /db_xref="GOA:Q62658"
FT /db_xref="InterPro:IPR001179"
FT /db_xref="UniProtKB/Swiss-Prot:Q62658"
FT /protein_id="AAI26072.1"
FT /translation="MGVQVETISSGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNK
FT PFKFTLGKQEVIRGWEEGVAQMSVGQRAKLIISPDYAYGATGHPGIIPPHATLVFDVEL
FT LKLE"
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SQ Sequence 1480 BP; 360 A; 350 C; 335 G; 435 T; 0 other;
cgccaacgcc gccgccgccg ccgccgccgc catgggagtg caggtggaga ccatctcttc 60
tggagacggg cgcaccttcc cgaagcgcgg ccagacctgc gtggtacact acacggggat 120
gcttgaagat gggaagaaat ttgactcctc tcgggacaga aacaagcctt ttaagtttac 180
actaggcaag caggaggtga tccgaggctg ggaagaaggg gtagcccaga tgagtgtggg 240
ccagagagcc aaactgataa tctccccaga ctatgcctat ggagccaccg ggcacccagg 300
catcatccca ccacatgcta ctcttgtttt tgatgtggag cttctaaaac tggaatgaca 360
gaagtggcct cctcccttag ctctgcacat ggatctgcca tggaggaatc tggtacctcc 420
agatgggtgc acatgaatcc atgggagctt ttcctgatgt cccaccactc tttgtataga 480
cacctactga ctgaatgtgt tccgtcactc agctttgctt cggacacctc catgtcctct 540
tcccccttct gtatgtgtgt tgacctaaac tgtatgccat aaacctcaag ttactttgtt 600
ttggggtgaa gactcagttt ctgtctttga gatctaagtt tccaatgaag tatattatca 660
agtgttaaca gcacaagcaa tggattaact ctagaatagg aattggtgtt gggggtggga 720
tttgcaagaa tttttatttt attttatttt tattttttgg atgaaaattt tatctattat 780
atattaagac attctgctac tgtgctgcaa agccatagca gattcgagat gctgttgggg 840
gctggatttt tctccagtga gggaagtcct gttaaaccga aagccctacc caaactgaag 900
tgggaaggga gggagagcct ttgcttctga caggccttcc acctaaaact gactgccttt 960
taaagcaggt cccttcactg ctgtgttgaa cactacaata tctgtccctg ggtcggcagg 1020
gacctctgaa gccttctttg tgacctggct taatttgttt ttcatcctat ggtttttcta 1080
atggattttc tggacttttg taatcttgta actatcacgc tccacttact aaattctaga 1140
acttcggtgg aaagtttaaa ctgaaggtgc tgtttgtaga ctcaccaccc agtggatgcc 1200
cagccaccac aacaaatcct tgagtgttct ctaagaaaat gatgctggtc atcacagctt 1260
cagcatctcc caggttttga tgcttggctc tctgctgatc ccagcttcct ggcttttcct 1320
ccttcagttc cttttcaccc tctgctgtcc cgtgtagtga tttggtgaga gaaagctttt 1380
gtcccctgcc tctgcactac atatgcggtt caagttttat tattgcaata aaagtgcttt 1440
atgctggctt ttctcaaaaa aaaaaaaaaa aaaaaaaaaa 1480
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