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EBI Dbfetch
ID BC099075; SV 1; linear; mRNA; STD; ROD; 4280 BP.
XX
AC BC099075;
XX
DT 04-JUL-2005 (Rel. 84, Created)
DT 18-JUL-2006 (Rel. 88, Last updated, Version 6)
XX
DE Rattus norvegicus dehydrogenase E1 and transketolase domain containing 1,
DE mRNA (cDNA clone MGC:116097 IMAGE:7441857), complete cds.
XX
KW MGC.
XX
OS Rattus norvegicus (Norway rat)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC Muridae; Murinae; Rattus.
XX
RN [1]
RP 1-4280
RX DOI; 10.1073/pnas.242603899.
RX PUBMED; 12477932.
RG Mammalian Gene Collection Program Team
RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT "Generation and initial analysis of more than 15,000 full-length human and
RT mouse cDNA sequences";
RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN [2]
RC NIH-MGC Project URL: http://mgc.nci.nih.gov
RP 1-4280
RG NIH MGC Project
RA ;
RT ;
RL Submitted (01-JUL-2005) to the EMBL/GenBank/DDBJ databases.
RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL MD 20892-2590, USA
XX
DR ImaGenes; IMAGp998G0715737Q.
DR ImaGenes; IRAKp961N12231Q.
DR ImaGenes; IRBPp993E1245D.
XX
CC Contact: MGC help desk
CC Email: cgapbs-r@mail.nih.gov
CC Tissue Procurement: Dr. Josef Lazar, Dr. Howard J. Jacob, Medical
CC College of Wisconsin
CC cDNA Library Preparation: Open Biosystems
CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC Center, Stanford University School of Medicine, Stanford, CA 94305
CC Web site: http://www-shgc.stanford.edu
CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu
CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC R. M.
CC Clone distribution: MGC clone distribution information can be found
CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC Series: IRAK Plate: 231 Row: n Column: 12
CC This clone was selected for full length sequencing because it
CC passed the following selection criteria: matched mRNA gi: 71043639.
XX
FH Key Location/Qualifiers
FH
FT source 1..4280
FT /organism="Rattus norvegicus"
FT /lab_host="DH10B"
FT /mol_type="mRNA"
FT /clone_lib="NIH_MGC_270"
FT /clone="MGC:116097 IMAGE:7441857"
FT /tissue_type="Placenta, day 21 of pregnancy, pooled 2."
FT /note="Vector: pExpress1"
FT /db_xref="taxon:10116"
FT gene 1..4280
FT /gene="Dhtkd1"
FT CDS 70..2832
FT /codon_start=1
FT /gene="Dhtkd1"
FT /product="dehydrogenase E1 and transketolase domain
FT containing 1"
FT /db_xref="GOA:Q4KLP0"
FT /db_xref="InterPro:IPR001017"
FT /db_xref="InterPro:IPR005475"
FT /db_xref="InterPro:IPR011603"
FT /db_xref="UniProtKB/Swiss-Prot:Q4KLP0"
FT /protein_id="AAH99075.1"
FT /translation="MASATVAAAGRALRRAVPLLRRSYQTERGVYGYRPRKAGSGEPRG
FT DRARPSVDHGLARLVTVYCEHGHKAAQINPLFPGQALLDTVPEIQALVQTLQGPFTTTG
FT LLNMGKEEASLEEVLAYLNHIYCGPISIETAQLQSQEEKDWFARRFEELKKETFTTEER
FT KHLSKLLLESQEFDHFLATKFATVKRYGGEGAESMMGFFHELLKLSAYGGITDIIIGMP
FT HRGRLNLLTGLLQLPPELMFRKMRGLSEFPENVAAIGDVLSHLTSSVDLDFGAHRPLHV
FT TMLPNPSHLEAINPVAVGKTRGRQQSQEDGDYSPNGSAQPGDKVICLQVHGDASFCGQG
FT IVLETFTLSNLPHFRIGGSIHLIVNNQLGYTTPAERGRSSLYSSDIGKLVGCAIIHVNG
FT DSPEEVVRATRLAFEYQRQFRKDVIIDLLCYRQWGHNELDEPFFTNPVMYKIIRARKSI
FT PDTYAEHLIASGLMTQEEVSDIKASYYAKLNGHLANVAHYSPPAPHLQARWQGLVQPAA
FT CVTTWDTGVPLELLRFVGVKSVEVPEELQLHSHLLKMYVQSRMEKVKNGTNLDWATAET
FT LALGSLLAQGFNVRLSGQDVGRGTFSQRHAMVVCQNTDDVYIPLNHMDPNQKGFLEVSN
FT SPLSEEAVLGFEYGMSIESPKLLPLWEAQFGDFFNGAQIIFDTFISGGEAKWLLQSGLV
FT ILLPHGYDGAGPDHSSCRIERFLQMCDSAEEGVDSDTVNMFVVHPTTPAQYFHLLRRQM
FT MRNFRKPLIVASPKMLLRYPVAVSTLEEMAPGTAFKPVIGDSSVDPKNVKTLIFCSGKH
FT FYALLKQRESLGAKKRDFAIIRLEELCPFPLDSLQQEMGKYKHVQDIIWSQEEPQNMGP
FT WSFVYPRFEKQLACKLRLVSRPPLPAPAVGIGTVHQQQHEAILFKTFTS"
XX
SQ Sequence 4280 BP; 1086 A; 1053 C; 1024 G; 1117 T; 0 other;
ccctcgccct ctgcttggtt gcagcttttt ccccccattc ttccacgcgt cttcgacccc 60
agactgcaca tggcatcggc tactgtggca gctgcaggga gagctctccg ccgagcggtc 120
ccgcttctca ggcgcagtta ccagacggag aggggcgtct atggataccg gcctaggaaa 180
gccgggagcg gcgagccccg aggcgaccgt gcacgcccct cagttgacca tggccttgcc 240
aggctggtga cagtgtattg tgagcatggc cacaaagctg cccagatcaa ccctctcttc 300
cccggacaag ccctcctgga tactgtgcct gaaatccaag ctcttgtgca gacactccag 360
ggacccttca ctaccacagg actgttaaac atgggcaaag aagaggcttc tcttgaggaa 420
gtgttggcct atttgaacca tatctactgt gggccaattt ctattgaaac cgcccagctg 480
cagagccagg aggagaaaga ctggtttgcc agaaggtttg aggaactgaa aaaggagaca 540
tttaccacag aagagcgaaa acacctgtcg aaactactgc tagaatctca ggagtttgac 600
cactttttgg ccaccaagtt tgccacagtg aagagatacg gaggtgaagg ggcagagagc 660
atgatgggct tttttcacga gttgctgaaa ttgtcagcct atggcggtat aacggacatc 720
attatcggga tgccccacag agggaggctg aatctgttga caggccttct gcagttacct 780
ccagagctga tgttccgtaa aatgcgaggc ttaagtgagt ttccagaaaa cgttgctgcc 840
attggtgacg tcctgtccca tctgacctcc tcagtggacc tagactttgg ggcccatcga 900
cccctccatg tgacaatgct acccaacccc tcacacctgg aagctattaa ccccgtggct 960
gtagggaaaa ctcgtggcag gcagcagtct caggaagacg gggactactc accaaatggt 1020
tctgctcagc ctggggacaa agtcatatgc ctgcaggttc atggcgacgc ttccttctgc 1080
ggtcaaggga ttgttctgga gacgttcacg ctctctaatc tcccacattt cagaatcggt 1140
gggagcatcc atctcatagt caataaccag ttgggttaca ccacgcctgc tgagagagga 1200
aggtcgtcct tatacagcag tgacattgga aagctagtag gctgtgccat catccatgtc 1260
aacggagaca gtccagagga agtggtccga gcgacacgac ttgcttttga gtatcagcgc 1320
cagttccgca aggacgtgat tattgatttg ttatgctata ggcagtgggg tcacaatgag 1380
ctggacgaac ctttcttcac caacccggtc atgtacaaaa tcatcagagc tcgaaagagc 1440
attcctgata cctacgcaga gcacctcatc gccagcggac tcatgacgca ggaggaggtc 1500
tccgacataa aagcctccta ctacgccaag ttaaatggcc acttggccaa tgtggcccac 1560
tacagccccc cggccccgca cctgcaggcc cgctggcagg gcctggtgca gccagcagcc 1620
tgcgtcacca cctgggacac gggcgtgccg ctggagctgc tacggttcgt tggcgtgaag 1680
tccgtggagg ttccagagga gctgcagtta cacagccacc tgctaaagat gtatgttcag 1740
tcaagaatgg agaaggtgaa gaatggaacc aatcttgact gggccaccgc agaaacactt 1800
gccttgggct ccttacttgc tcaaggtttc aatgttcgtc tgagtggcca agatgttggc 1860
cgtggaactt tcagtcaaag gcatgcaatg gtggtttgcc agaacactga tgatgtctac 1920
attcctctga accacatgga ccctaaccag aagggctttc tggaggttag caacagcccg 1980
ctgtcagaag aggctgtctt gggatttgaa tacgggatga gcatcgaaag cccaaagttg 2040
ctgcccctct gggaagctca gtttggcgat ttcttcaatg gagcccagat catctttgac 2100
acattcatct ctggaggcga ggccaagtgg ctcctgcaga gtggccttgt catcctcctt 2160
ccacacggct atgatggagc cgggcctgac cactcatcct gtcggataga gcgcttcttg 2220
cagatgtgcg acagtgcgga agaaggcgtg gacagcgaca ctgtgaacat gtttgtggtt 2280
cacccgacta cgcctgctca gtacttccac ttgcttagaa gacagatgat gcggaacttc 2340
agaaagcctc tcatcgttgc atctcccaaa atgttactca ggtaccctgt agctgtgtca 2400
acgcttgagg agatggcgcc aggaacagca ttcaaacctg tcattggtga ttcgtcggta 2460
gaccccaaaa atgtcaaaac cctcatattc tgctccggca aacattttta tgccctgctg 2520
aagcaaagag agtctctggg ggctaagaag cgtgattttg ccatcattcg actagaggaa 2580
ctctgccctt tcccgctgga ttcattacaa caagagatgg gcaaatacaa acacgttcaa 2640
gatatcatct ggagtcagga ggagcctcag aacatgggtc cgtggtcttt tgtttatcca 2700
aggtttgaaa agcaacttgc ttgcaagctc cgtctcgtaa gtcgaccccc tttgccagcg 2760
cccgcggtgg gaattggcac agtgcaccag cagcagcatg aagccatcct cttcaagacc 2820
ttcacttcct aacgtgctct ggggaaacag gatcgccttt taagcaacat gtcccaggag 2880
aaagcttgtt cctcaactcc ctctcctttc ctttagctta gcgcggaagt ctgtgttcct 2940
ctgaaattct ggactgattt ggacaactga atctggagtg tgtgggatac acaggggagt 3000
tgatttttta taagcacatg aaacagacag tagatttcac acttttcagg accacagtgt 3060
ttgtcatgct ttagttatat gtgagtgaag tggcagagga ggtcatgagg cagttggatt 3120
ctgactgtac tggaactgac cttaaatgag tagagaacat tcttggccag aacgtggcac 3180
tgtgtagagg cagccccaac actacctctt aattggttta ttacatgtaa ctttccatat 3240
tttccctccc ttttaaagtc agcagtattt tcgttttaaa tgtcatctta gagccgctct 3300
acaaaatgtt ccaacagaca ccactaaaac tagaccattc cgaattcatg ttctttcgag 3360
ttttatccat tatccttaaa agtaagtgct gttacaccca cattcctgat tgtatgatct 3420
tctagctctg taccaataca gggtttcctg tagtccagac tggcctcata ttcactgcat 3480
agctgaagat gaccttgaac ttctgatctt tttacctcta cctcctgagt gctggaattg 3540
cagacttgtg caattatgcc cagttaatgc tggcaatgag tatccattaa ggatggtagc 3600
ccccaagctc tctaccaact gagctacagc cctggcccct aataatttta tgttatgaag 3660
tattagctgt attaaaatgg acttgttctt ttcctattaa gatccccaac ctgttatatt 3720
gctgtgatat tttctaattt ttcaattaac cggcatttga tagagggatg tcagtgccag 3780
gttaatcact tttgtctcta aaagttgcag gtacaattat gatgtatatt tttgctataa 3840
attacattaa gtttagccac cttctcaaac caggcacttg gggttccaca gaggttgaac 3900
ctagttcgaa gcaacctaag cggtagttat gtggcgtcac ttgaggtggt tctgaggagc 3960
atctaccatg tacattctgg cttatgatgg attttctaaa aggtgattga ggacatagga 4020
agtgctgaaa tatatccatt gcctttccgg ttttgccagc catgggccat gtcttacatc 4080
cttcagtcct ttcttgtgtc aatccttacg aatcttgtaa tatagtacca tttaaattgg 4140
taaagtttca aaggcaagtt tagtaggaat gtacatttat tctcttatct tttggtttcc 4200
caaatgaaaa gatattgaaa ctctaactat acaataaatg gaatttgacg tatttaaaaa 4260
aaaaaaaaaa aaaaaaaaaa 4280
//
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