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EBI Dbfetch
ID BC092849; SV 1; linear; mRNA; STD; VRT; 1638 BP.
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AC BC092849;
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DT 06-APR-2005 (Rel. 83, Created)
DT 19-MAR-2009 (Rel. 100, Last updated, Version 5)
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DE Danio rerio alkaline ceramidase 1, mRNA (cDNA clone MGC:110285
DE IMAGE:7400329), complete cds.
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KW MGC.
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OS Danio rerio (zebrafish)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
XX
RN [1]
RP 1-1638
RX DOI; 10.1073/pnas.242603899.
RX PUBMED; 12477932.
RG Mammalian Gene Collection Program Team
RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT "Generation and initial analysis of more than 15,000 full-length human and
RT mouse cDNA sequences";
RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN [2]
RC NIH-MGC Project URL: http://mgc.nci.nih.gov
RP 1-1638
RG NIH MGC Project
RA ;
RT ;
RL Submitted (04-APR-2005) to the EMBL/GenBank/DDBJ databases.
RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL MD 20892-2590, USA
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DR Ensembl-Gn; ENSDARG00000002768; Danio_rerio.
DR Ensembl-Gn; ENSDARG00000010347; Danio_rerio.
DR Ensembl-Gn; ENSDARG00000027523; Danio_rerio.
DR Ensembl-Gn; ENSDARG00000059340; Danio_rerio.
DR Ensembl-Gn; ENSDARG00000060004; Danio_rerio.
DR Ensembl-Gn; ENSDARG00000074740; Danio_rerio.
DR Ensembl-Gn; ENSDARG00000079610; Danio_rerio.
DR Ensembl-Gn; ENSDARG00000079616; Danio_rerio.
DR Ensembl-Tr; ENSDART00000010144; Danio_rerio.
DR Ensembl-Tr; ENSDART00000023797; Danio_rerio.
DR Ensembl-Tr; ENSDART00000063619; Danio_rerio.
DR Ensembl-Tr; ENSDART00000082438; Danio_rerio.
DR Ensembl-Tr; ENSDART00000084055; Danio_rerio.
DR Ensembl-Tr; ENSDART00000110495; Danio_rerio.
DR Ensembl-Tr; ENSDART00000113191; Danio_rerio.
DR Ensembl-Tr; ENSDART00000113237; Danio_rerio.
DR Ensembl-Tr; ENSDART00000113630; Danio_rerio.
DR Ensembl-Tr; ENSDART00000114624; Danio_rerio.
DR ImaGenes; IMAGp998D2315590Q.
DR ImaGenes; IRAKp961K18211Q.
DR ImaGenes; IRBOp991C0161D.
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CC Contact: MGC help desk
CC Email: cgapbs-r@mail.nih.gov
CC Tissue Procurement: John Ngai, Nancy Freeman, NIDCD
CC cDNA Library Preparation: Dr. Sumio Sugano
CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC Center, Stanford University School of Medicine, Stanford, CA 94305
CC Web site: http://www-shgc.stanford.edu
CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu
CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC R. M.
CC Clone distribution: MGC clone distribution information can be found
CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC Series: IRAK Plate: 211 Row: k Column: 18
CC This clone was selected for full length sequencing because it
CC passed the following selection criteria: matched mRNA gi: 62205170.
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FH Key Location/Qualifiers
FH
FT source 1..1638
FT /organism="Danio rerio"
FT /lab_host="DH10B"
FT /mol_type="mRNA"
FT /clone_lib="NIH_ZGC_14"
FT /clone="MGC:110285 IMAGE:7400329"
FT /tissue_type="Olfactory epithelium"
FT /note="Vector: pME18S-FL3"
FT /db_xref="taxon:7955"
FT gene 1..1638
FT /gene="acer1"
FT /gene_synonym="asah3"
FT /gene_synonym="zgc:110285"
FT CDS 181..981
FT /codon_start=1
FT /gene="acer1"
FT /gene_synonym="asah3"
FT /gene_synonym="zgc:110285"
FT /product="alkaline ceramidase 1"
FT /db_xref="GOA:Q568I2"
FT /db_xref="InterPro:IPR008901"
FT /db_xref="UniProtKB/Swiss-Prot:Q568I2"
FT /db_xref="ZFIN:ZDB-GENE-050417-70"
FT /protein_id="AAH92849.1"
FT /translation="MAGVFSYESSEVDWCEDNYKHSENVVEYFNTMSSFIFFVISPIML
FT YLLHPYAKERNLAVHLVWIMMVFVGIFSMYFHMTLSFMGQMLDELSILWVLAIGYSLWF
FT PRKHFPSFVKDRTSFARLVLTITIISTLSSFVKPTANAYALNCFAIHILYSLFVELKSC
FT TDERVLRLAWASIGLWVLAISCWISDRFGCSFWQKLDFCYLHGIWHILIVMATAYASTL
FT IAYLDASQEIPYSLPDLQYWPRNNWAIGLPYIVLKGTNTTRKTC"
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SQ Sequence 1638 BP; 460 A; 330 C; 336 G; 512 T; 0 other;
tcaattgaga aatgccaccg ttcgctcggt ttcacctgaa ccctccacag gtgatgtcag 60
agaccgggac ccgagtaaca ggatcgggga catttctcct ctacttaaac ctgacacatg 120
gagcgctcgg cggtggatgc gttttccaga ggtatcccct catttccatc ctttgtcaaa 180
atggcaggcg tgttttccta cgagagctct gaggtggact ggtgtgagga caactataaa 240
cattcggaga atgttgtgga atatttcaac acgatgagca gtttcatctt ctttgtgatc 300
tcacctataa tgctgtacct gctacacccg tatgccaagg aaaggaacct ggctgtgcat 360
ctggtctgga tcatgatggt gtttgtaggt atcttctcca tgtatttcca catgactctg 420
agttttatgg gccagatgct ggatgagctg tccatcctgt gggttttggc tattggttac 480
tcgctgtggt ttccccgcaa acacttccct tccttcgtta aggacaggac atctttcgct 540
cgtttggtgc tgaccatcac tatcataagt actctgtcat cttttgtcaa acctacagcc 600
aatgcctacg ctctcaactg cttcgccatc catatcctct actctctgtt tgtggagtta 660
aagagttgca cagatgagcg agtgctgcgt ctggcctggg cctccattgg cctgtgggtt 720
ctggccatct catgctggat tagcgatcgc tttggctgca gcttctggca gaaactggac 780
ttctgttatc tgcacggtat ctggcacatt ttgattgtaa tggccactgc ttatgctagc 840
actttgattg catacctgga tgctagtcag gagatccctt attccctccc ggacttgcag 900
tactggcccc ggaataactg ggccattggg ctgccataca tcgtcctcaa aggcaccaat 960
acgacccgga aaacatgcta gcaaacatga acagatctca tatttaaagc tgactggtgt 1020
aactctgatc tgggaccagc cttcaacttt caaaaatggt gaataattga tgtgagaaag 1080
agctgaatct ctgtgaggac tgaagtgaaa tgaatgttgc atgttatgat tgtttcttgt 1140
atttctcaca gaacctaaat gtgtatgtgt gattttctcc ttttgagact gtattttcat 1200
tacaatcagc atgtggttgt tacgtggaca tgaatatttg cactgtagtg acagaattga 1260
atgtatgtgc aatacattct gtagtttact tgatttacaa atcagaggct tcaatttgtc 1320
atcggcacta cttgattctt gggtgaaact tataatgtta tattgacagt cggtttgata 1380
tatgactcat gaaattaata ttctcttaac aatgatgcaa acgtttgttc acaaatgtaa 1440
taactgggat tgtgaacatt tgttgtgcga tttttaaatc ttaattcatt ttactgcatt 1500
ataaataata aatataatta gataataatt atatttatta tttaaatatt gtataaatct 1560
ctatatatct acaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 1620
aaaaaaaaaa aaaaaaaa 1638
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