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EBI Dbfetch
ID BC062139; SV 1; linear; mRNA; STD; MUS; 3726 BP.
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AC BC062139;
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DT 15-NOV-2003 (Rel. 77, Created)
DT 24-SEP-2008 (Rel. 97, Last updated, Version 10)
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DE Mus musculus toll interacting protein, mRNA (cDNA clone MGC:69995
DE IMAGE:6334946), complete cds.
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KW MGC.
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OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC Muridae; Murinae; Mus.
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RN [1]
RP 1-3726
RX DOI; 10.1073/pnas.242603899.
RX PUBMED; 12477932.
RG Mammalian Gene Collection Program Team
RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT "Generation and initial analysis of more than 15,000 full-length human and
RT mouse cDNA sequences";
RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN [2]
RC NIH-MGC Project URL: http://mgc.nci.nih.gov
RP 1-3726
RG NIH MGC Project
RA ;
RT ;
RL Submitted (13-NOV-2003) to the EMBL/GenBank/DDBJ databases.
RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL MD 20892-2590, USA
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DR ASTD; TRAN00000160676.
DR Ensembl-Gn; ENSMUSG00000025139; Mus_musculus.
DR Ensembl-Tr; ENSMUST00000001950; Mus_musculus.
DR Ensembl-Tr; ENSMUST00000055819; Mus_musculus.
DR ImaGenes; IMAGp998J0313796Q.
DR ImaGenes; IRAKp961M10131Q.
DR ImaGenes; IRAVp968C10104D.
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CC Contact: MGC help desk
CC Email: cgapbs-r@mail.nih.gov
CC Tissue Procurement: Mark Maconochie, Ph.D. and Nancy L. Freeman,
CC Ph.D.
CC cDNA Library Preparation: ResGen, Invitrogen Corp
CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC DNA Sequencing by: Genome Sequence Centre,
CC BC Cancer Agency, Vancouver, BC, Canada
CC info@bcgsc.bc.ca
CC Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC Clone distribution: MGC clone distribution information can be found
CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC Series: IRAK Plate: 131 Row: m Column: 10
CC This clone was selected for full length sequencing because it
CC passed the following selection criteria: matched mRNA gi: 31340585.
CC Differences found between this sequence and the mouse C57BL/6J
CC genome (build 36) are described in misc_difference features below.
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FH Key Location/Qualifiers
FH
FT source 1..3726
FT /organism="Mus musculus"
FT /lab_host="DH10B"
FT /mol_type="mRNA"
FT /clone_lib="NIH_MGC_130"
FT /clone="MGC:69995 IMAGE:6334946"
FT /tissue_type="Embryo, day 9 mouse (C57BL/6 background)
FT otocysts"
FT /note="Vector: pCMV-SPORT6.1"
FT /db_xref="taxon:10090"
FT gene 1..3726
FT /gene="Tollip"
FT CDS 80..904
FT /codon_start=1
FT /gene="Tollip"
FT /product="toll interacting protein"
FT /db_xref="GOA:Q9QZ06"
FT /db_xref="InterPro:IPR000008"
FT /db_xref="InterPro:IPR003892"
FT /db_xref="InterPro:IPR008973"
FT /db_xref="InterPro:IPR009060"
FT /db_xref="MGI:1891808"
FT /db_xref="UniProtKB/Swiss-Prot:Q9QZ06"
FT /protein_id="AAH62139.1"
FT /translation="MATTVSTQRGPVYIGELPQDFLRITPTQQQQQIQLDAQAAQQLQY
FT GGTVGTVGRLSITVVQAKLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVI
FT QCTVPPGVDSFYLEIFDERAFSMDDRIAWTHITIPESLKQGQVEDEWYSLSGRQGDDKE
FT GMINLVMSYTSLPAAMMMPPQPVVLMPTVYQQGVGYVPIAGMPAVCSPGMVPMAMPPPA
FT VAPQPRCNEEDLKAIQDMFPNMDREVIRSVLEAQRGNKDAAINSLLQMGEES"
FT misc_difference 3687..3726
FT /gene="Tollip"
FT /note="polyA tail: 40 bases do not align to the mouse
FT genome."
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SQ Sequence 3726 BP; 892 A; 890 C; 940 G; 1004 T; 0 other;
cgcagcttgt ggtgggagcg gaagagctct cccggcgggt ctctgtgcag ttggcgaggc 60
agagggccgc cgcagcacca tggcgaccac cgtcagcacg cagcgcgggc cggtgtacat 120
tggtgaactc ccccaggact tcctccgtat aacacccaca caacagcagc agcagatcca 180
gctggatgcc caggcagccc agcagctgca gtatggagga acagttggta ccgtgggtcg 240
cctcagcatc actgtggtac aggcaaaatt ggcaaagaat tatggcatga ctcgtatgga 300
cccttactgc cgtctgcgtc tgggctatgc tgtttatgaa actcccacag cacacaatgg 360
ggccaagaac cctcgctgga acaaagtcat tcagtgcaca gtgcccccag gtgtggactc 420
gttctacctt gagatcttcg atgagcgcgc cttctccatg gatgaccgca tagcttggac 480
ccacatcacc atccccgagt ccctgaagca gggccaagtg gaggacgagt ggtatagcct 540
gagtgggagg cagggcgatg acaaggaggg catgattaac ctggtcatgt cctacacgtc 600
cctcccagct gccatgatga tgcctcctca gcctgtggtc ctgatgccaa ctgtgtacca 660
gcagggtgtt ggctatgtgc ccattgcagg gatgcctgct gtctgcagcc ctggcatggt 720
gccgatggcc atgcccccac cagctgtggc tcctcagccc cgctgtaatg aagaggacct 780
caaagctatc caggacatgt ttcccaacat ggacagggaa gtaatccgtt ctgtgcttga 840
agcccagaga gggaacaaag atgctgccat caattccttg ctgcaaatgg gtgaagagtc 900
ctagacccgc ctgtggccct tggcttcaca ccactgaccc ttggacttgt ccacccaggg 960
ctccccaggg tcaccatccc cacaagattc caatgaaaga ccatccacat accccttcct 1020
tggacatctg cgccgcccct tcctacatat ttcggggatg catgtggatt tttggttcta 1080
agcaggcagt cctcttcatt gttgctgggg gacagagtta ggggacagtt ctctcctagt 1140
ctctagctgg gtgatggtgg catggccctg ttattgcaca gatcagtggt cctgtttggg 1200
gacctgcatc tcctgtcctc accctattct ggaaagcatt cttacagaaa gcaactgcct 1260
ctgccaagat actagaaatt gtacagcatc cttctgagtt gatggatgga tggcatggag 1320
ttactcagtc cagctgggat ggttgttgag ggtgcactga gttcatgtgc acttacttac 1380
aggttatttt tagaactttc aagctaaaag ctccttccct cttctgatgt tgtatgtgaa 1440
catgggcccc tcagctagtc ctggccagtg agatatgctt cccagccata tccagtgggt 1500
ctctaacctc ctgtctagct tatctgccac tgtctggcta ggcttcagcc acagaaatcc 1560
aacttgaata cagaaggtat ccagacctgg tgcttggttg gccaggcccc acattagccc 1620
tcactgctgg aggctgcttt ccacatcctc ttgtttagta ccagcatcat gggtcttact 1680
ccaggggctg ttcttgttga tagaccttca tcacagagcc cagagtcaag cgaaggagat 1740
gggtgggtgt ggcactatgt gcttactact aaaattcaag cattgtgaca ctactgacct 1800
gcagtatact ctgtggaccc atactgtagc ttggcttgag tgataaaaat tcatgcttaa 1860
attaaacttt cataaaggta gaggtgcctg tacctgacca gtggatattg tatagtgtat 1920
tttaggttgc aaacctttga gcccgtgacc tggccataca tgtatttagg gagaaattga 1980
gtggtgcctt gtgctaagat acagaccgtg aaagctttct cagaaccagt actgtcacaa 2040
ggtgctgtta ggaagctcca gcattgccac agggttatgg tgggacagtt ttgccttaca 2100
ttgccgttac tttttgtttt ctgagaatct gcacacccgg tttggatatg tgatccacca 2160
ataagggcat gaaggtgact cctagcagtt tggactgttg tgaaggactt caaataagaa 2220
aattagtgct tcagtttttg gtctttgcct cctaaaaacg cggtaaaata tcctacttgc 2280
tgttatctac aggggtgctt tttgtcaaat gtattgttta taagtattta tttttgtaag 2340
cctaaaggca gtatgtggtg atggtgagca tgggatggtg gtaacaagca cttttcttta 2400
gttgtaggtc tttaaacctt ttaactgcaa aatggagaag aaagaccaat gtttattaaa 2460
tagattcaac cacttacttt aacacaacca ggcactggaa gcctccattc tagactgttg 2520
atcggccttg tgcttggtaa gcagatgccc tcttgcaggg tggatgagtc aggcaggcag 2580
aacctcctta agtggtccac ttagtgttac cagcagactg cagacactgc agagcaggaa 2640
cctcactcag tacctgtctc taggtctcag gtgtggcggc tgtgtgcatc cgcatctgcc 2700
ttacggaggt ataggttgaa cacagggcca ctttgttctg tgaggttcta taggaagcat 2760
cacgatttgc tgccagcccc tgagcagtcc cacagcactc agaggcagcg ttcactaact 2820
tacgactgct taaatgagga agagtgatgg ttttaagaca gatttaagac ttgagctgaa 2880
cacagactct tccctttgtc atgaacattt tattttttta atagattgaa gaaagatcac 2940
attttataag gcctgagtga tactcctagg ttttgctgtt tttttgtctt ggaatttcat 3000
gtcagcgccc atctagtgca aggagagagg cagcacttgt cagcgcctgt gtaggtacca 3060
gggcatcaga gcatggcttg ttggcttcca tcccatcctg aatcttgttg agatgaagag 3120
tcatccctag aaggagctca gaggcagagg ccacagccga gtcagacagg cttctgcatg 3180
gggaccaggc tctcactggg tgtaattgct gctcttgcca agtttgaaga ttgatgttgg 3240
tagcaaaatt tctcaaggtg ttcactggag ccccctcccc tcgggccagc tctagtgtag 3300
gcatgcatct agggatggcc tggcctgttt tcttctctgg acatgttggt tggctgaagt 3360
tgtaacctgc tgcacgcttg tgggctgaca tggccagagg ctttcatctc accatgtgag 3420
tgatgcctac ccgatgacag aagtgttgtg cgactgggct ctgccctcgc cctcccaggc 3480
caccctttac agacactggt atcatctggt acactgtctg gaggttggtg ggaatggttc 3540
tcagaactgt ctgtgattat tttgggaatg ggggggtcca tgtccatatt tttctttgat 3600
tatatgatat atttttactt ttcagccttc taatttaata agtggtctat ataaaataga 3660
aaaataaagt cctctgagga aatgttaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 3720
aaaaaa 3726
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