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EBI Dbfetch
ID BC010020; SV 2; linear; mRNA; STD; HUM; 1859 BP.
XX
AC BC010020;
XX
DT 07-JUL-2001 (Rel. 68, Created)
DT 15-OCT-2008 (Rel. 97, Last updated, Version 8)
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DE Homo sapiens adaptor-related protein complex 3, sigma 2 subunit, mRNA (cDNA
DE clone MGC:19643 IMAGE:2959670), complete cds.
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KW MGC.
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OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
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RN [1]
RP 1-1859
RX DOI; 10.1073/pnas.242603899.
RX PUBMED; 12477932.
RG Mammalian Gene Collection Program Team
RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT "Generation and initial analysis of more than 15,000 full-length human and
RT mouse cDNA sequences";
RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN [2]
RC NIH-MGC Project URL: http://mgc.nci.nih.gov
RP 1-1859
RG NIH MGC Project
RA ;
RT ;
RL Submitted (02-JUL-2001) to the EMBL/GenBank/DDBJ databases.
RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL MD 20892-2590, USA
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DR Ensembl-Gn; ENSG00000157823; Homo_sapiens.
DR Ensembl-Gn; ENSG00000242498; Homo_sapiens.
DR Ensembl-Tr; ENST00000336418; Homo_sapiens.
DR Ensembl-Tr; ENST00000398333; Homo_sapiens.
DR Ensembl-Tr; ENST00000423566; Homo_sapiens.
DR H-InvDB; HIT000034743.
DR ImaGenes; IMAGp958M1551Q.
DR ImaGenes; IRALp962A1127Q.
DR ImaGenes; IRAUp969D0461D.
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CC On Dec 19, 2003 this sequence version replaced gi:14603100.
CC Contact: MGC help desk
CC Email: cgapbs-r@mail.nih.gov
CC Tissue Procurement: ATCC
CC cDNA Library Preparation: Rubin Laboratory
CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC DNA Sequencing by: National Institutes of Health Intramural
CC Sequencing Center (NISC),
CC Gaithersburg, Maryland;
CC Web site: http://www.nisc.nih.gov/
CC Contact: nisc_mgc@nhgri.nih.gov
CC Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
CC Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
CC Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
CC Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
CC Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
CC McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
CC Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
CC Young,A., Zhang,L.-H. and Green,E.D.
CC Clone distribution: MGC clone distribution information can be found
CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC Series: IRAL Plate: 27 Row: a Column: 11.
CC Differences found between this sequence and the human reference
CC genome (build 36) are described in misc_difference features below.
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FH Key Location/Qualifiers
FH
FT source 1..1859
FT /organism="Homo sapiens"
FT /lab_host="DH10B-R"
FT /mol_type="mRNA"
FT /clone_lib="NIH_MGC_15"
FT /clone="MGC:19643 IMAGE:2959670"
FT /tissue_type="Colon, adenocarcinoma"
FT /note="Vector: pOTB7"
FT /db_xref="taxon:9606"
FT gene 1..1859
FT /gene="AP3S2"
FT /note="synonyms: AP3S3, sigma3b, FLJ35955"
FT CDS 49..630
FT /codon_start=1
FT /gene="AP3S2"
FT /product="adaptor-related protein complex 3, sigma 2
FT subunit"
FT /db_xref="GOA:P59780"
FT /db_xref="HGNC:571"
FT /db_xref="InterPro:IPR000804"
FT /db_xref="InterPro:IPR011012"
FT /db_xref="InterPro:IPR016635"
FT /db_xref="UniProtKB/Swiss-Prot:P59780"
FT /protein_id="AAH10020.1"
FT /translation="MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDN
FT ICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENV
FT CELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVS
FT AVKNINLPEIPRNINIGDLNIKVPNLSQFV"
FT misc_difference 1841..1859
FT /gene="AP3S2"
FT /note="polyA tail: 19 bases do not align to the human
FT genome."
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SQ Sequence 1859 BP; 460 A; 455 C; 465 G; 479 T; 0 other;
ggagctttct gggagtagcc ggtgctgaga gaaccgtggc tggcaaagat gattcaggcg 60
attctggttt tcaacaacca tgggaagcca cggctagtcc gcttctacca gcgtttccca 120
gaagaaattc aacagcagat tgttcgagag actttccatc tagtcctcaa gcgggatgac 180
aacatctgta acttcttgga gggtggaagt ttgattggtg gctctgacta caaactgatc 240
taccggcact atgctaccct ctactttgta ttttgtgtgg attcctcaga gagtgaactt 300
ggaatcttgg acctcatcca ggtttttgtg gaaactctgg ataagtgttt cgaaaatgtg 360
tgtgaattgg atttgatctt ccatatggat aaggtgcact acatcctcca ggaggtggtg 420
atgggtggga tggtgttgga aacaaacatg aatgaaatcg tggctcagat tgaggctcaa 480
aacaggctgg agaaatccga gggtggcctt tcagcagccc ctgcgcgggc tgtgtctgct 540
gtgaaaaaca tcaacctgcc agagattcct cggaacatca acattggcga tctcaacatc 600
aaagttccca acctgtccca gtttgtctga ggatcaagta ttggcctgaa atagagtcct 660
taagacaagc aaagacaagc aaggcaagca cgtctggaaa cagaacccat tttgagcctt 720
agaagagtca agcctcagga cctggaaact ttgtgtctgg ggaagactgt ttggcatgga 780
atagggaagg gattcctatt gacactgctc gggtgcaccc agttctcaca tgtgcagtca 840
tgccgttctc tgatgcatac ggccactgca gatgtgaggg gccctgcctt cctcagtagg 900
gagtcaacat gcccaagtca tttgcacctt tacctctcac atggatgctc ccaagggtta 960
gggactgcat tgagcaggcc cacctgcttc ccagaacctc ctcactaggg ctgagcacct 1020
tctctgagta gagtcttcat ccttagcacc acagacttct gaggtcctgt gccctttact 1080
tgctggtgag gtgtcatagg tagaaaaggg ctggcccttc agatctgggg gtgtggtgag 1140
tggcaagtaa gggcagaatt ttaggagaac cagagtcacc cgctggctct actgagattg 1200
ttacacccag aatccttttg tgtttttttg tggttttttt tttttgaggt ggagtcttgc 1260
tctgtcaccc aggctggagt gctgtggtgc aatctcggct cactgcaacc tctgcttccc 1320
gggttcaagc atttctcctg tctcagcctc cccagtagct gggattacag gcacccacca 1380
ccatgcccag ctaattgttg tatgtttagt agagacaggg tttcaccatg ttggccaggc 1440
tgggctcgaa ctcctggacc tcaagtgatc tacccgcctt ggcctcccaa agtgctggca 1500
ttacaggtgt gagccaccgt gcccggccac cagaatcctt tggtatagcc aagccttttg 1560
gttaccgcct catgaagaat atgcttcccg cattgtccta gtcccagttg tattctcaca 1620
ggtgttatgt gcaggacaca atccaaatca taaacctggc tcatgcccaa cacatttctg 1680
ctaataggga gagggaccca ccacacaccc acacatgcca gaggtccctc ctcacagagg 1740
agagggcctg tgtctgtaga aggttaaagc tgacaacatg tgaaacatcc cagaattatg 1800
actcttccca agtttaaaat acattctcct catgagagca aaaaaaaaaa aaaaaaaaa 1859
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