EBI Dbfetch
ID U25634; SV 1; linear; genomic DNA; STD; PRO; 7163 BP.
XX
AC U25634;
XX
DT 23-MAY-1995 (Rel. 43, Created)
DT 17-APR-2005 (Rel. 83, Last updated, Version 5)
XX
DE Agrobacterium vitis plasmid pTrAB4 putative LysR-type protein (ttuA),
DE putative tartrate transport protein (ttuB), putative tartrate dehydrogenase
DE (ttuC), putative hydroxypyruvate reductase (ttuD) and putative pyruvate
DE kinase (ttuE) genes, complete cds.
XX
KW .
XX
OS Agrobacterium vitis
OC Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae;
OC Rhizobium/Agrobacterium group; Agrobacterium.
OG pTrAB4 (tartrate degradation plasmid of the strain AB4)
XX
RN [1]
RP 1-7163
RA Crouzet P., Otten L.;
RT "Sequence and mutational analysis of a tartrate utilization operon from
RT Agrobacterium vitis";
RL Unpublished.
XX
RN [2]
RP 1-7163
RA Szegedi E., Otten L., Czako M.;
RT "Diverse types of tartrate plasmids in Agrobacterium tumefaciens biotype
RT III strains";
RL Mol. Plant Microbe Interact. 5:435-438(1992).
XX
RN [3]
RP 1-7163
RA Crouzet P.;
RT ;
RL Submitted (24-APR-1995) to the EMBL/GenBank/DDBJ databases.
RL Philippe Crouzet, Department of Phytopathology, Plant Molecular Biology
RL Institute of the C.N.R.S., Rue du General Zimmer 12, Strasbourg Cedex,
RL 67084, France
XX
FH Key Location/Qualifiers
FH
FT source 1..7163
FT /organism="Agrobacterium vitis"
FT /plasmid="pTrAB4 (tartrate degradation plasmid of the
FT strain AB4)"
FT /strain="AB4"
FT /mol_type="genomic DNA"
FT /note="region encoding products that give the ability to
FT grow on tartrate as sole carbon source"
FT /db_xref="taxon:373"
FT CDS complement(405..1319)
FT /codon_start=1
FT /transl_table=11
FT /gene="ttuA"
FT /note="putative LysR-type regulatory protein; transcribed
FT in the absence of tartrate; Method: conceptual translation
FT supplied by author."
FT /db_xref="GOA:P52669"
FT /db_xref="InterPro:IPR000847"
FT /db_xref="InterPro:IPR005119"
FT /db_xref="InterPro:IPR011991"
FT /db_xref="UniProtKB/Swiss-Prot:P52669"
FT /inference="non-experimental evidence, no additional
FT details recorded"
FT /protein_id="AAA68696.1"
FT /translation="MELEQLKCFVAAAEELHFGRAAQKMGILPASLGRHLRLLEESLGT
FT RLMSRTTRSVALTEDGVALLEEVRPLLHRLQTLAEEFRSRKTQQATVLRIGAIDSAAAG
FT LIPPLLHDFRERFPGIITQLVEDKSIRLIPKLIAGRLDIVFIRPRDGLNRNLVVRTLTQ
FT ETPVIALPVTHPLANRERISVDELREEPLIVPERRSRPHSYDLTMKLFEDAGLHPRIAQ
FT TADEKQTIINLVAAGIGSAIVPRWTAKLAVFGVTFVPLMTVGGISLRKLPLAAAWAKAV
FT RDPGRDQLLELLDTNIDRYAEQA"
FT CDS 1443..2744
FT /codon_start=1
FT /transl_table=11
FT /gene="ttuB"
FT /note="putative tartrate transporter; inducible by
FT tartrate; Method: conceptual translation supplied by
FT author."
FT /db_xref="GOA:Q44470"
FT /db_xref="InterPro:IPR004744"
FT /db_xref="InterPro:IPR011701"
FT /db_xref="InterPro:IPR016196"
FT /db_xref="UniProtKB/Swiss-Prot:Q44470"
FT /protein_id="AAA68697.1"
FT /translation="MNSDLETRVLRKITLRIVPFIMLLYFVAFLDRVNIGFAALTMNED
FT LGFSSTVFGIGAGIFFVGYFLFEVPSNLILNKVGARIWIARVMITWGIVSGLMAFVQGT
FT TSFYALRFLLGVAEAGFFPGIILYLSFWFPARRRAAVTAIFMAAAPLSTVLGSPISGAL
FT MEMHGFLGLAGWQWMFLIEAAPAVILGVVVLFYLTDRPEKAKWLSEDERNWLVKTMNAE
FT QAAKGKASHSILAGLADIRVIALALVYFGTSAGLYTLGIWAPQIIKEFGLSSLQVGFIN
FT AVPGIFAVAAMVLWARHSDKTGERTWHVVGACLLAAVGLAFATGATSVFTVLIALTLVN
FT IGISCSKPPLWSMPTLFLSGPAAAAGIATINSIGNLGGFVGPSMIGWIKDTTGSFAGGL
FT YFVAGLLVVSAIVTLVLSRTAPENGGKVAPVQHR"
FT CDS 2766..3860
FT /codon_start=1
FT /transl_table=11
FT /gene="ttuC"
FT /note="putative tartrate dehydrogenase; already transcribed
FT in the absence of tartrate and induced when trartrate is
FT added; Method: conceptual translation supplied by author."
FT /db_xref="GOA:Q44471"
FT /db_xref="InterPro:IPR001804"
FT /db_xref="InterPro:IPR011829"
FT /db_xref="InterPro:IPR019818"
FT /db_xref="UniProtKB/Swiss-Prot:Q44471"
FT /inference="non-experimental evidence, no additional
FT details recorded"
FT /protein_id="AAA68698.1"
FT /translation="MREYKIAAIPADGIGPEVIAAGLQVLEALEQRSGDFKIHTETFDW
FT GSDYYKKHGVMMPADGLDKLKKFDAIFFGAVGAPDVPDHITLWGLRLPICQGFDQYANV
FT RPTKILPGITPPLRNCGPGDLDWVIVRENSEGEYSGHGGRAHRGLPEEVGTEVAIFTRV
FT GVTRIMRYAFKLAQARPRKLLTVVTKSNAQRHGMVMWDEIAAEVATEFPDVTWDKMLVD
FT AMTVRMTLKPETLDTIVATNLHADILSDLAGALAGSLGVAPTANIDPERRFPSMFEPIH
FT GSAFDITGKGIANPIATFWTAAQMLEHLGERDAAARLMSAVERVTEAGILTPDVGGTAN
FT TRQVTEAVCNAIAGSNILKMAAAE"
FT CDS 3809..5125
FT /codon_start=1
FT /transl_table=11
FT /gene="ttuD"
FT /note="putative hydroxypyruvate reductase; inducible by
FT tartrate; Method: conceptual translation supplied by
FT author."
FT /db_xref="GOA:Q44472"
FT /db_xref="InterPro:IPR005346"
FT /db_xref="InterPro:IPR007835"
FT /db_xref="UniProtKB/Swiss-Prot:Q44472"
FT /protein_id="AAA68699.1"
FT /translation="MQRNRRIEYLEDGRCRMTWNDVSARQVLRRIFDAAVASADPKIAV
FT VNNLPERPRGRCVVVGAGKASAAMAAAVDAAWPDVDLSGIVVTRYGHAVPAGRIEILEA
FT SHPVPDEMSIKAAEKIFAAVQGLGPDDLVVALISGGGSSLLVSPTGKMTLTDKRAVNQA
FT LLASGATISEMNTVRKHLSAIKGGHLARAALPAKLVTLIISDVPGDDPSEIASGPTVAD
FT PTTLADAAAIIARYGIDLPESARAVLVQGNETPKAGEVAGEIRLVAAPSIALEAAAAAA
FT LDAGLCPLILGDALEGEAREMGRVMAGIALSARDKGLPVAAPAVILSGGESTVSLGAMT
FT EGRGGRNTEFLLSLAVALKGASGIWAIAGDTDGIDGVEDAAGALVAPDSLIRMRDAGID
FT PRATLSAHDSYTAFKAIGDLVVTGPTLTNVNDIRAILIG"
FT CDS 5134..6582
FT /codon_start=1
FT /transl_table=11
FT /gene="ttuE"
FT /note="putative pyruvate kinase; inducible by tartrate;
FT Method: conceptual translation supplied by author."
FT /db_xref="GOA:Q44473"
FT /db_xref="InterPro:IPR001697"
FT /db_xref="InterPro:IPR011037"
FT /db_xref="InterPro:IPR015793"
FT /db_xref="InterPro:IPR015794"
FT /db_xref="InterPro:IPR015795"
FT /db_xref="InterPro:IPR015813"
FT /db_xref="InterPro:IPR018209"
FT /db_xref="UniProtKB/Swiss-Prot:Q44473"
FT /inference="non-experimental evidence, no additional
FT details recorded"
FT /protein_id="AAA68700.1"
FT /translation="MFIRNNRRSKIVATVGPASSSPDMLRSLFLAGVDTFRLNFSHGAR
FT ADHAEVYRNIRALEQEHDAAIAVLQDLQGPKIRIGVLAHGRLDLARGSTIGFILGREGG
FT EGMNDIPLPHREIFEVAVPGMDLLIDDGRIKVRIMEVMDGRLVCEVLNGGALSNRKGVN
FT VPGAVLDISPLTAKDREDLEFGLELGVDWVALSFVQRARDMIEARSLVGDRAGLIAKIE
FT KPSALDDIEDIVRLSDSVMVARGDLGVEIPPEDVPGKQKEIIRACRLAAKPVIVATQML
FT DSMVSSPTPTRAEASDVAGAIYDGADAVMLSAETATGAYPVEAVEIMNRIIEKTEKHKH
FT YRPILEATEPDVAQSPPHAVATAAANVAVALGSPVVVAYTSSGTTAARISRARPALPIL
FT ALTPSEQVARRLNMFWGVVGVRSQDVHTYEASLIHAQQAVQEAKLASPSDHIVIVAGFP
FT FAQQGSTNNLRVVQIAATDNLEIA"
XX
SQ Sequence 7163 BP; 1386 A; 2081 C; 2160 G; 1536 T; 0 other;
gtcgacgaag gaaagggatc tgtatccctt gataacaata cggctcaaat gcattcggca 60
cctttggctc aaaagaatat acaaccgcta ctattgccga ttcggtggtt gtcttcatca 120
tcggttgcgt ctttcttgct aaaaaaatat atggagcggc caacctcgaa ttggttccgt 180
gccgccgctt cctctcaagc accacctgcg cgactctggt tgctgaaaga acgaaattgg 240
taaaccggcg ggcgccgtga agcaaaaagg ttttatattt cagtatcata aaaactgaca 300
ccaccggatc tcggttcgat tcccatcaag agcgaagagg aaccagatgt tggcgtccgc 360
ctctctatcg ggtgcagaca gatggaatga agaggcgggc gagcctacgc ctgctcggca 420
tatcggtcga tgtttgtgtc gagaagttcc agcaactggt cgcgtccggg atcacgaaca 480
gcttttgccc aggctgcggc aagaggcagt ttccggagtg aaatgccgcc aaccgtcatg 540
aggggaacga aagtcacccc gaataccgcg agtttcgcgg tccagcgggg gacgatggcg 600
gatccgattc ctgccgcaac gaggttgata atcgtttgtt tctcgtcagc agtctgagcg 660
atgcgcgggt gtagtccggc gtcctcgaag agtttcatgg tcaggtcata gctgtgggga 720
cgagagcgac gctctggcac gatgaggggc tcctcgcgca gttcatcgac ggagatccgc 780
tcgcggttcg cgagcggatg cgtgacaggc agtgcaataa cgggtgtttc ctgcgtcagg 840
gtgcgaacga ccaggttccg gttcagtccg tctcgaggtc gaataaagac gatatccaga 900
cgcccggcaa tcagttttgg aatgagacgt atcgacttgt cttcgacaag ttgcgtgatg 960
atcccgggga atcgctcccg aaaatcatgc agcagcggcg gtataagacc tgctgcagcg 1020
ctgtctatcg cacctatgcg gagcacggtc gcctgctgcg ttttccttga tcgaaactct 1080
tccgcaagtg tctggagacg atgaagaagg ggcctcacct cctctagcag ggcgactcca 1140
tcttcggtca aggcgacact tcgggttgtc cgggacatga ggcgagtgcc gagggactcc 1200
tccagcagtc ttaaatgccg tcccagcgat gccggtaata ttcccatttt ctgcgcagcc 1260
ctaccgaaat gcagttcttc ggccgcagcg acgaagcatt ttaattgttc cagttccatg 1320
acatgccttt ataacatcta attatataat taaagcattg tcgcttggga ggaaagtaag 1380
aattaacgtc tttcctgaag gcgcaggagg tgcgcccaac ggatcattgg gaggagttcg 1440
ctatgaacag cgacctggag acgcgcgttc tgcgcaaaat cactctgcgc atcgtgccat 1500
ttatcatgct gctttatttt gtagcgttcc tggaccgggt gaatatcggt ttcgccgcac 1560
tgaccatgaa cgaggacctt ggattttcct cgactgtctt cggtatcgga gcaggcatct 1620
tcttcgtcgg ctacttcctg ttcgaagttc cgtccaacct cattctcaac aaagtcggtg 1680
cgcgcatctg gattgcccgc gtcatgatca cctgggggat cgtgtccggc ctcatggcgt 1740
tcgtacaggg aacaacaagt ttctatgcgt tacgcttcct tctcggcgtt gccgaggcgg 1800
gctttttccc ggggattatc ctttacctga gcttctggtt tccggctcgc cgacgtgcgg 1860
cagtgacagc gattttcatg gccgcagccc cgctttcgac cgtcctcggt tcgccgatct 1920
ccggagcgct catggagatg catggtttcc tcggtcttgc cggctggcag tggatgttcc 1980
tgattgaagc cgctcctgcg gtcatcctcg gcgtcgtcgt cctcttttac ctcaccgacc 2040
gtccggaaaa agccaagtgg ctctcggaag atgagcgcaa ctggcttgtg aagacgatga 2100
acgctgagca ggccgcaaag ggcaaggcca gccacagcat tcttgcaggg ctcgctgaca 2160
ttcgggttat cgcgctcgcc cttgtctatt tcggtacgtc cgccggcctt tacaccctcg 2220
gcatctgggc gccgcagatc atcaaggagt tcggcctatc gtcccttcag gtcggcttca 2280
tcaacgcagt accgggcatt ttcgcagttg ctgcaatggt tctctgggcg cgtcattccg 2340
acaagaccgg tgaacggacc tggcatgtcg tcggcgcttg tctgcttgcc gccgtcgggc 2400
ttgcatttgc cacgggtgcg acaagcgtct tcaccgtcct tattgcgctg acgctggtta 2460
acatcgggat tagctgctcg aagccgccgc tttggagcat gcccacgctc ttcctgtcag 2520
gaccagcggc cgcagccggt atcgctacca tcaactcgat cggcaacctg ggcggcttcg 2580
tcggcccctc gatgatcggc tggatcaagg acactacggg cagctttgcg ggcgggctct 2640
acttcgtcgc cggtctgctg gtcgtatccg ctatcgtgac gctcgtgttg tcgcgtaccg 2700
caccggaaaa cgggggcaaa gtcgccccgg tccaacatcg ttaaatctca aagtggagaa 2760
aagacatgcg tgaatacaag attgcagcga tccctgcgga tgggattggt cctgaggtta 2820
tagctgcggg tcttcaggtt ttggaggcgc tggaacagcg cagcggtgac ttcaagatcc 2880
ataccgaaac cttcgactgg ggttcggact attacaagaa gcacggcgtg atgatgccgg 2940
ccgacgggtt ggacaagctg aagaagttcg atgcaatctt cttcggtgcg gtcggcgccc 3000
ctgacgttcc cgaccatatc acgctctggg gcctgcgcct gccgatctgc caggggttcg 3060
accaatacgc caatgtgcgc ccgacgaaga tcctgcccgg catcacgcca cccttgcgca 3120
attgcggtcc aggcgatctc gactgggtca tcgtgcggga gaattccgaa ggcgagtatt 3180
ccggccatgg cggccgcgcc cataggggcc ttccggaaga ggtcggcacg gaagtggcga 3240
tcttcacccg cgtcggcgtg acccgcatta tgcgctacgc cttcaagctg gcccaggcgc 3300
gcccgcgcaa actgctgact gtcgtcacca agtcgaacgc ccagcgccat ggcatggtga 3360
tgtgggacga gatcgcggcc gaagtggcga cggagttccc ggatgtcacc tgggacaaga 3420
tgctggtcga tgcgatgacg gtgcgcatga cgctgaagcc ggagacgttg gatacgatcg 3480
tggcgaccaa tctgcatgcc gacatcctgt cggatctggc tggtgctctc gctggcagcc 3540
tcggggttgc gccgacggcc aacatcgacc cggagcgccg tttcccatca atgtttgagc 3600
cgatccacgg atctgccttc gacattaccg gcaagggtat cgccaacccg atcgccactt 3660
tctggactgc cgcgcagatg ctcgagcatc tcggtgaacg cgacgccgcc gcacggctga 3720
tgagcgccgt cgagcgcgtg accgaagcgg gcatcctgac ccccgatgtc ggcggcaccg 3780
ccaacacccg ccaagtcacc gaagccgtat gcaacgcaat cgcaggatcg aatatcttga 3840
agatggccgc tgcagaatga cctggaacga tgtgtccgct cgccaggtgc tgcgtcgaat 3900
tttcgacgca gccgttgcca gcgcggatcc gaaaatagct gttgtcaaca acctcccaga 3960
gcgtcccaga ggtcgctgcg ttgtggtggg agcgggcaag gcgtcggctg cgatggcggc 4020
tgcggtcgac gccgcctggc ccgatgtcga tctctcgggc atcgtggtca ctcgctacgg 4080
ccacgccgtt ccggcgggac gcatcgaaat cctggaggcc tcccaccccg tcccggatga 4140
gatgagcatc aaggctgcag agaagatttt cgctgcggtt cagggccttg gtccggacga 4200
tctcgtggtg gctctcatct ccggcggcgg ttcgtcattg cttgtatcgc ctacgggcaa 4260
gatgactttg accgacaaaa gggcggtcaa tcaggcgctg cttgccagcg gtgccaccat 4320
ctccgagatg aataccgtcc gcaagcatct ttccgctatc aagggaggcc atctggcccg 4380
cgcagcactg ccggcaaaac tggtgacact gatcatctcc gacgtgccgg gtgatgatcc 4440
atcggagatc gcctcgggtc caacggtcgc ggatcctacc actttggcag acgcagcagc 4500
catcatcgcc cgctacggaa ttgacctgcc cgagtctgcg cgcgcagtgc ttgtgcaagg 4560
caacgagacg cctaaggcag gggaggtcgc aggcgagatt cggctggttg ctgccccctc 4620
gatagcgctc gaagcggccg ccgcggccgc gctagatgcc ggtttgtgtc cacttatcct 4680
cggagatgcc ctggaaggtg aggctcgcga aatggggcgt gtcatggcag gcatcgcact 4740
ctccgcccgc gacaagggcc tgcctgtagc agcacctgcc gtcatcctgt ccggtggtga 4800
gagtaccgtt tcccttggtg ccatgaccga ggggcgcggt gggagaaaca cggagtttct 4860
tctcagtctt gcggttgccc ttaagggagc ttccggcatc tgggccatcg ccggtgatac 4920
tgatggtatc gacggtgtcg aggatgctgc cggtgcgctg gtcgcgccgg acagtcttat 4980
ccgaatgcgc gatgctggta tcgatccacg ggcgaccttg tctgcccatg atagttacac 5040
ggccttcaag gccatcggcg acctggtggt cacaggccca acgcttacga acgtcaacga 5100
catccgcgca attctcatag gttaggtttg gacatgttca tacgcaacaa ccggcgatca 5160
aagatcgtcg cgacggtcgg accggcgtca agttcgcccg acatgcttcg ctcactgttt 5220
ctcgccggtg tcgatacgtt ccgcctgaat ttcagccatg gtgcccgggc cgatcacgcg 5280
gaagtctata ggaacatccg ggctctcgag caggagcatg atgctgctat cgccgtgctg 5340
caggatcttc agggtccgaa gatccggatc ggagttctgg cacatggcag gctcgatctc 5400
gcacgtggat ccaccatcgg atttatcctt ggccgtgagg gtggtgaagg aatgaacgat 5460
attccgctac ctcatcggga aatcttcgag gtggcggtgc ccggaatgga cctcctgatc 5520
gacgacggta gaataaaagt ccggatcatg gaggtgatgg acgggcggct tgtttgcgag 5580
gtcctcaatg gaggcgcctt gtcgaaccgc aagggtgtca acgtgcccgg cgctgtcctg 5640
gacatttccc cgctcacggc gaaagatcgt gaggacctgg aattcgggct cgagcttggc 5700
gtcgactggg tcgcactttc tttcgttcag cgggcacgcg acatgatcga agcccggtcc 5760
ctcgttggag acagggctgg cctcattgcc aagatcgaga agccgtctgc cctcgatgac 5820
atcgaggata ttgtcaggct ttcggacagc gtcatggttg cgcgaggtga tctcggcgtg 5880
gagatcccgc cggaggacgt tccgggcaag cagaaggaaa tcatccgtgc atgccggcta 5940
gcggccaagc ccgtgattgt cgccacacag atgctcgact cgatggtgag ttcgccaacg 6000
ccgacgcgcg ctgaagcttc ggacgttgcc ggtgccatct atgatggggc agatgccgtc 6060
atgctttccg ccgagaccgc aacaggcgcc tacccggtgg aggcggtcga aattatgaac 6120
cggatcatcg agaagacgga gaagcacaag cactaccggc cgatccttga ggcaacggaa 6180
cccgatgtcg ctcaatcacc gccgcatgca gttgccactg cagcagccaa cgttgccgtg 6240
gctctgggat cgccggttgt ggtggcctat acatcgagcg gaacaaccgc ggccagaatt 6300
tcgcgtgcca gaccggcatt gccaattctg gctctcactc cgtccgaaca agtcgcgcgc 6360
cggctcaaca tgttctgggg ggttgtcggc gtgcgatcac aagatgtcca cacctatgag 6420
gcgtcgctga ttcatgcgca acaggcggtg caggaagcaa agctggcaag tccctccgat 6480
cacattgtca tcgtggcggg atttccattt gcgcaacagg gcagcaccaa caatctccgc 6540
gtcgttcaga tcgccgcaac cgacaaccta gagattgcgt agattgtatc gagcaataag 6600
ggggatcaat gcgtcatgag catgtttgcg gtgcagccgt gcggcgcggc tcgccgcatc 6660
cccatcaccc tgctcgattg cttctatgat ttccgcatgc tcaccggccg agtgcagcgg 6720
caagggccgt aggttgaggg tgaacatgcg ggcgcgatgc aattgatcgg cgacggtccc 6780
cgccatccgc atgaggcggc tgtttccgct ctctattacg agagtctgat gaaaatcctc 6840
gtcggccaca gcccatcgtg gaaggtcgtt gtcggccaat gcctcaatca tccgctttgt 6900
ggcggccttc agaagctgga tgacgggcgc gcgttccacc atcggcagcc gggcgagccg 6960
tgccgccgcg gcaccctcga gcgcggtgat gacttcgtag atttcttcga tgtccgcggg 7020
agacagggcg cagatgatga tgcccttctt gggaagtatc cggaccagtc cgtcttcctg 7080
cagtcgcgcc atggcttcgt gcaccggggt tcggctcatg ccgagctgac gcgcgcaatt 7140
tcaatttctg cggcttggta ccc 7163
//
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