EBI Dbfetch
ID L01112; SV 1; linear; genomic DNA; STD; PRO; 6977 BP.
XX
AC L01112;
XX
DT 17-NOV-1992 (Rel. 34, Created)
DT 14-NOV-2006 (Rel. 89, Last updated, Version 7)
XX
DE Chromatium vinosum poly(3-hydroxybutyric acid) (phbA, phbB, phbC) genes,
DE complete cds.
XX
KW phbA gene; phbB gene; phbC gene; poly(3-hydroxybutyric acid).
XX
OS Allochromatium vinosum
OC Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae;
OC Allochromatium.
XX
RN [1]
RP 1-6977
RX DOI; 10.1111/j.1432-1033.1992.tb17270.x.
RX PUBMED; 1396692.
RA Liebergesell M., Steinbuechel A.;
RT "Cloning and nucleotide sequences of genes relevant for biosynthesis of
RT poly(3-hydroxybutyric acid) in Chromatium vinosum strain D";
RL Eur. J. Biochem. 209(1):135-150(1992).
XX
FH Key Location/Qualifiers
FH
FT source 1..6977
FT /organism="Allochromatium vinosum"
FT /strain="D"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:1049"
FT terminator complement(777..847)
FT /gene="phbC"
FT CDS complement(832..1899)
FT /codon_start=1
FT /transl_table=11
FT /gene="phbC"
FT /product="3-hydroxybutyric acid"
FT /EC_number="1.1.1.35"
FT /EC_number="2.3.1.9"
FT /db_xref="GOA:P45370"
FT /db_xref="InterPro:IPR000073"
FT /db_xref="InterPro:IPR010125"
FT /db_xref="UniProtKB/Swiss-Prot:P45370"
FT /protein_id="AAA23320.1"
FT /translation="MFPIDIRPDKLTQEMLDYSRKLGQGMENLLNAEAIDTGVSPKQAV
FT YSEDKLVLYRYDRPEGAPEAQPVPLLIVYALVNRPYMTDIQEDRSTIKGLLATGQDVYL
FT IDWGYPDQGDRALTLDDYINGYIDRCVDYLREAHGVDKVNLLGICQGGAFSLMYSALHP
FT DKVRNLVTMVTPVDFKTPDNLLSAWVQNVDIDLAVDTMGNIPGELLNWTFLSLKPFSLT
FT GQKYVNMVDLLDDPDKVKNFLRMEKWIFDSPDQAGETFRQFIKDFYQNNGFLNGGVVLG
FT GQEVDLKDITCPVLNIFALQDHLVPPDASRALKGLTSSPDYTELAFPGGHIGIYVSGKA
FT QKEVTPAIGKWLNER"
FT RBS complement(1908..1912)
FT /gene="phbC"
FT mRNA complement(<1957..3064)
FT /gene="phbC"
FT CDS complement(1957..3030)
FT /codon_start=1
FT /transl_table=11
FT /gene="phbC"
FT /note="ORF2"
FT /db_xref="InterPro:IPR010123"
FT /db_xref="UniProtKB/Swiss-Prot:P45372"
FT /protein_id="AAA23321.1"
FT /translation="MSNTNFFNDDWLELQRKYWDNWTDMSRKAMGLDSASSSANTPWEA
FT AIDQWWKAMAPAAPDLSRSFMEKMMEQGKNFFRLADTFAKRADEGNAGNGLELWTKTLE
FT DMQKRFSGSLDDGGNTMQRLMSFWELPLDNWQRMMSSMSPMPGDMLRNMPHEQFKDSLD
FT RALSAPGLGYTREEQSQYQELMRSAMEYQAALQEYTNVYTKLGMKSVEHMGSYIQGVID
FT SGKTIDSARALYDNWVACCEGAYADEVATPEYARIHGRLVNAQMALKKRMSILVDENLG
FT ALNMPTRSELRTLQDRLQETRRENKALRHSLRDLERRVAALAGEEPATKPATALRSPAP
FT AAKAPARRRTTKTNPAD"
FT RBS complement(3040..3045)
FT /gene="phbC"
FT /note="for ORF2"
FT -10_signal complement(3072..3077)
FT /gene="phbC"
FT -35_signal 3083..3088
FT /gene="phbA"
FT -35_signal complement(3093..3098)
FT /gene="phbA"
FT -10_signal 3106..3111
FT /gene="phbA"
FT mRNA 3118..>4365
FT /gene="phbA"
FT RBS 3166..3170
FT /gene="phbA"
FT CDS 3181..4365
FT /codon_start=1
FT /transl_table=11
FT /gene="phbA"
FT /product="3-hydroxybutyric acid"
FT /EC_number="1.1.1.35"
FT /EC_number="2.3.1.9"
FT /db_xref="GOA:P45369"
FT /db_xref="InterPro:IPR002155"
FT /db_xref="InterPro:IPR016038"
FT /db_xref="InterPro:IPR016039"
FT /db_xref="InterPro:IPR020610"
FT /db_xref="InterPro:IPR020613"
FT /db_xref="InterPro:IPR020615"
FT /db_xref="InterPro:IPR020616"
FT /db_xref="InterPro:IPR020617"
FT /db_xref="UniProtKB/Swiss-Prot:P45369"
FT /protein_id="AAA23322.1"
FT /translation="MSENIVIVDAGRSAIGTFGGSLSSLSATEIGTAVLKGLLARTGLA
FT PEQIDEVILGQVLTAGVGQNPARQTTLHAGLPHSVPAMTINKVCGSGLKAVHLAMQAIA
FT CGDADIVIAGGQESMSQSSHVLPRSRDGQRMGDWSMKDTMIVDGLWDAFNNYHMGTTAE
FT NIAQKYGFTREQQDAFAAASQQKTEAAQKAGRFQDEIIPIEIPQRKGDPKVFDADEFPR
FT HGTTAESLGKLRPAFSKDGSVTAGNASGINDGAAMVVVMKESKAKELGLKPMARLVAFA
FT SAGVDPAIMGTGPIPASTKCLEKAGWTPADLDLIEANEAFAAQAMSVNQDMGWDLSKVN
FT VNGGAIAIGHPIGASGARVLVTLLYEMQKRDAKKGLATLCIGGGQGVALAVERM"
FT terminator 4370..4461
FT /gene="phbA"
FT CDS 4512..4973
FT /codon_start=1
FT /transl_table=11
FT /note="ORF4"
FT /db_xref="InterPro:IPR007897"
FT /db_xref="InterPro:IPR010134"
FT /db_xref="InterPro:IPR012909"
FT /db_xref="UniProtKB/Swiss-Prot:P45373"
FT /protein_id="AAA23323.1"
FT /translation="MNSERIIKKYPNRRLYDTEVSRYITLADVRDLVMSGQPFRVLDSA
FT NDSDITRSILLQIMLEEETGGQPLFSANMLAQIIRFYGGTLQGTFARYLESSLDLFAKQ
FT QQEVTKALTDNPFGTVTRLTQKNVEIWADLQDELMRAAGFPVAPRKKKE"
FT RBS 5058..5061
FT /note="for ORF5"
FT CDS 5070..5432
FT /codon_start=1
FT /transl_table=11
FT /note="ORF5"
FT /db_xref="UniProtKB/Swiss-Prot:P45374"
FT /protein_id="AAA23324.1"
FT /translation="MNTTDSLKTVNEWTNKSVERMTSFGELNVRLFEKLAARQMDAVNL
FT YMDHSMRLMKLATESKGYNDLFKGQVDATKELSERVMAESKATMQFFGDARDEYRVWFE
FT KSLNDVSEDLRKSVAV"
FT terminator 5455..5515
FT /note="for ORF5"
FT RBS 5611..5615
FT /gene="phbB"
FT CDS 5621..6361
FT /codon_start=1
FT /transl_table=11
FT /gene="phbB"
FT /product="3-hydroxybutyric acid"
FT /EC_number="1.1.1.35"
FT /EC_number="2.3.1.9"
FT /db_xref="GOA:P45375"
FT /db_xref="InterPro:IPR002198"
FT /db_xref="InterPro:IPR002347"
FT /db_xref="InterPro:IPR011283"
FT /db_xref="InterPro:IPR016040"
FT /db_xref="UniProtKB/Swiss-Prot:P45375"
FT /protein_id="AAA23325.1"
FT /translation="MARIALVTGGIGGIGTSICTRLAKDGCTVVANCHPSEAAAAEEWK
FT QARAAEGFDIAVFTADVSSFDDSARMVREITEQVGPIDILVNCAGITRDKTFKKMEQAH
FT WEAVINVNLNSVFNVTRQVWDGMLERGFGRIINISSVNGQRGQFGQANYSAAKAGMHGF
FT TMALAQEGASKGVTVNTISPGYVETAMTLAMNDDVRNSIISGIPMRRMAQPNEIAAAIA
FT FLAGDESGYMTGANLPVNGGLFMH"
FT terminator 6370..6486
FT /gene="phbB"
FT CDS 6511..6977
FT /partial
FT /codon_start=1
FT /transl_table=11
FT /note="ORF7"
FT /db_xref="InterPro:IPR002678"
FT /db_xref="UniProtKB/Swiss-Prot:P45371"
FT /protein_id="AAA23326.1"
FT /translation="MNAVMTDVRDLIRYCDDVLDAARFADYAPNGLQVEGERPLQRLVS
FT GVTASAALIEAAIAEHADAILVHHGWFWKNENPCLIGIKGQRARTLLSAGVSLIAYHLP
FT LDAHPELGNNATLGRRLDFIDMEPTALANGLLWAAIGSAHDACVLHGACLAS"
XX
SQ Sequence 6977 BP; 1273 A; 2145 C; 2218 G; 1341 T; 0 other;
cgaattcatc cagggccact atctccaact gccgagttcg gacttgaact tcgatttcca 60
gaccctgtca catgaaaccc gatagtctgc tcatgagtac ggcgcttcac acgggacggc 120
tgatcctgac tccatccgat ccgcatctcg cgccggatgt cgatttgttg atcgaaggac 180
tgagccggcc tggattcctg agtgctccat tgatcctgga gaatccacag ccgggggcgg 240
gcgaccgagc ctttgcgact ggcgccggct tcctgagtct actgaccttt gccggctgcg 300
ccgtccggat tcgcgatgac gtcagagcgg ggcgtttctc gcatattcgc atcccgccag 360
tcagtcagca tccaaggttg atggttggcc gtaacacgcg cccaccccga tgtgtcgggt 420
gtcgcgcgcc cctgtcgggc tggcgcgcgc tggtggaaca ctgggccacg catccgcatg 480
ccggcgtgca atgtccggcc tgcggcgaga cacgtccgcc ctggctctgg gactggaaac 540
agcaaggagg attcggacgc gccttcgtgc agatcgaaga ggtctttccg ggtgaggcag 600
tgccgacgcc gatgttcttc gagcagctca ttcgggtcag tgggatcggc tggcgacatt 660
tctacatcca ggattgaatc aagcctggta taggggcgcc ttaacgtgaa ggccagctcc 720
aagtccgctc gatgagcgac gacgcccggt gagtcccgag cgtcatcgtg gatgccgttc 780
gacggctgac gacagcgagc cgccggaatt gctccggcgg ctcgggaagc gttatcgctc 840
gttgagccac ttaccgatgg ccggcgtgac ttctttctgc gccttgccgc tgacatagat 900
gccgatgtga ccgccgggga aggccagctc ggtgtagtcc gggctgctgg tcagtccctt 960
gagcgcccta gaggcatccg gcggcaccag gtgatcctgg agcgcgaaga tgttgagcac 1020
cgggcaggtg atgtccttca ggtccacttc ctgtccgccc agcaccacgc cgccattgag 1080
gaagccgttg ttctggtaga agtccttgat gaactgacgg aaggtctcgc cggcctgatc 1140
cgggctgtcg aagatccatt tctccatgcg caggaagttc ttgaccttgt ccgggtcgtc 1200
gagcagatca accatgttga cgtacttctg acccgtcagg ctgaaaggct tgagcgacag 1260
gaaggtccag ttcagcagct caccggggat gttgcccatg gtgtcgaccg ccagatcgat 1320
gtcgacgttc tgcacccagg ccgagagcag gttgtccggg gtcttgaagt cgaccggcgt 1380
gaccatggtc acgaggttgc gcaccttgtc cgggtgcagc gcgctgtaca tcaggctgaa 1440
ggcgccgccc tgacagatac cgagcagatt gaccttgtcg acgccgtggg cttcgcgcag 1500
atagtccacg cagcggtcga tgtagccgtt gatgtagtcg tcgagcgtga gcgcgcggtc 1560
gccctgatcc ggatagcccc agtcgatcag gtagacgtcc tggccggtgg ccagcagtcc 1620
cttgatggtg gagcggtctt cctggatgtc ggtcatgtag ggccggttga ccagggcgta 1680
gacgatcagg agcggcacgg gctgggcttc gggcgcgccc tcgggtcggt catagcgata 1740
gaggaccagc ttgtcctcgc tgtagacggc ctgcttgggg ctgacgccgg tgtcgatggc 1800
ctcggcgttg agcagattct ccatgccctg acccagcttg cggctgtagt cgagcatctc 1860
ctgggtgagt ttgtccggcc ggatgtcgat ggggaacatg atcgctgtcc tctgattctg 1920
tctggtgagc ctgctgttcg atcagccgct tgacgctcaa tcggccggat tggtcttggt 1980
ggtgcgccgg cgtgccggag ccttggcggc cggggcgggc gacctgagcg cagtggcagg 2040
cttggtggcc ggctcctcac cggccagggc tgcgacgcga cgttccagat cgcgcaggct 2100
gtgacgcagg gccttgttct cgcgacgggt ctcctggagc cggtcctgga gggtgcgcag 2160
ctcgctgcgg gtcggcatgt tcaatgcgcc caggttctcg tcgaccagga tcgacatgcg 2220
cttcttgagc gccatctgag cgttgaccag ccggccgtgg atgcgggcgt attccggtgt 2280
ggcgacctcg tcggcatagg cgccttcgca gcaggcgacc cagttgtcgt agagcgcgcg 2340
cgccgagtcg atggttttgc cgctgtcgat gacaccctgg atgtaggagc ccatgtgctc 2400
gaccgacttc atgccgagct tggtgtagac gttggtgtat tcctggagcg cggcctgata 2460
ctccatggcg ctgcgcatca gctcctgata ctggctctgc tcctcgcggg tgtagccgag 2520
accgggcgcc gagagggctc gatcaagact gtccttgaac tgctcgtggg gcatgttgcg 2580
cagcatgtcg cccggcatcg gcgacatcga ggacatcatg cgctgccagt tgtcgagcgg 2640
cagctcccag aacgacatca ggcgctgcat ggtgttgccg ccgtcgtcga gcgagccgct 2700
gaagcgcttc tgcatgtctt cgagcgtctt ggtccagagc tccaagccgt tgccggcgtt 2760
gccctcgtcg gcgcgtttgg cgaaggtgtc ggcgagacgg aagaagttct tgccctgctc 2820
catcatcttt tccatgaacg agcgtgacag atccggggcg gcgggcgcca tggctttcca 2880
ccactgatcg atggccgcct cccagggcgt gttggccgaa ctggaggcgc tgtccagacc 2940
catggccttg cggctcatgt cggtccagtt gtcccagtac ttgcgttgca gttcgagcca 3000
atcgtcattg aagaaattag tgttgctcat ggacgtaccc tcctcgtggc gcgtggtgtt 3060
gggcgaacgg tatcatgtgg atttgtgcac tgcaacaaag atgcgtagaa tccacaggcc 3120
gcgaccccat atcggggacg ctcgtccatt tccaatcaga atccagagga catccacgcc 3180
atgagcgaga acatcgtcat cgtcgacgcc ggccgcagtg ccatcggaac cttcggcggc 3240
agtctgtcgt cactctcggc caccgagatc ggcaccgccg tgctcaaggg gctgctggcg 3300
cgtaccggac tcgcgccgga acagatcgac gaggtgattc tcggccaggt gctgaccgcc 3360
ggcgtgggcc agaaccccgc ccgtcagacc acgctgcacg cggggctacc gcattcggtg 3420
ccggccatga ccatcaacaa ggtctgcggc agcggtctga aggcggtgca tctggcgatg 3480
caggccatcg cctgcgggga tgccgacatc gtcatcgccg gcggtcagga gagcatgagc 3540
cagtcctcgc acgtcctgcc gcgttcgcgc gacggtcagc gcatgggcga ctggtcgatg 3600
aaggacacca tgatcgtcga cggcctctgg gatgccttca acaactatca catgggcacc 3660
accgccgaga acatcgccca gaagtacggc tttacgcgcg agcagcagga cgccttcgcc 3720
gccgcctcgc agcagaagac cgaggccgcg cagaaggctg gccgcttcca ggacgagatc 3780
attccgatcg agattccgca gcgcaagggc gatccgaagg tgtttgatgc cgacgagttc 3840
ccgcgtcacg gcaccacggc cgagagtctg ggcaagctgc gtccggcctt ctcgaaggac 3900
ggcagcgtca cggcgggtaa cgcctccggc atcaacgacg gggcggccat ggtcgtggtg 3960
atgaaggagt ccaaggccaa ggaactgggt ctgaagccga tggcgcgtct ggtggccttc 4020
gccagcgccg gtgtcgatcc ggcgatcatg gggacgggcc cgatcccggc gtcgaccaag 4080
tgcctggaga aggccggctg gaccccggcg gatctggatc tgatcgaggc caacgaagcc 4140
ttcgccgcgc aggccatgtc ggtcaaccag gacatgggct gggatctgtc caaggtcaac 4200
gtcaacggcg gcgccatcgc catcggtcat ccgatcggcg cctccggtgc gcgcgtgctc 4260
gtgaccctgc tctatgagat gcagaagcgc gacgccaaga agggtctggc gacgctgtgc 4320
atcggcggcg gccagggcgt ggcgctggcg gtcgagcgga tgtgagccgt cgtccgccgg 4380
tctgaatcgc cggcggaccg agcctcctga atcgctccag gcactgaacg ccctgccgat 4440
cccggatcgg tggggcgttt gcgcgcttgg ggtagacttg ccgaacgacc agccgaaccg 4500
cccgggtgcc catgaacagc gagcgcatca tcaagaagta tccgaaccgc cgcctctacg 4560
acaccgaggt cagccgctat atcaccctcg ccgatgtgcg cgatctggtg atgagcggac 4620
agcccttccg cgtcctcgac agcgccaatg acagcgatat cacccgttcc atcctgctcc 4680
agatcatgct ggaggaggag accggcggtc agccgctgtt cagcgccaac atgctggccc 4740
agatcatccg cttctacggc ggcacccttc agggcacctt cgcccgctat ctggaatctt 4800
cactcgacct gttcgccaag cagcaacagg aagtgaccaa ggcactcacc gacaatccct 4860
tcgggacggt gacacgcctg actcagaaga acgtcgagat ctgggctgat ctccaggacg 4920
aactcatgcg cgcggctggc tttccggtcg cgccgcgcaa gaaaaaagaa taatgaggat 4980
tgcgaaaatt gcgcttgacg gccgtcggtc acagctttat tgtgcaatgc aacattgctg 5040
cactgcacaa accttacgga gagatgatca tgaacaccac cgacagcctc aagaccgtca 5100
acgagtggac caacaagagc gtcgagcgca tgaccagctt cggtgagctg aacgtgcgtc 5160
tgttcgagaa gctggccgcc cgtcagatgg acgccgtgaa cctgtacatg gatcacagca 5220
tgcgcctgat gaagctggcc accgagtcca agggttacaa tgacctcttc aagggtcagg 5280
tcgacgccac caaggaactg agcgagcgcg tcatggccga gagcaaggcc accatgcagt 5340
tcttcggcga tgcccgcgac gaataccgcg tgtggttcga gaagagcctg aacgacgtca 5400
gcgaagatct gcgcaagagc gtcgccgtct aaagacgccg acctctgggc catcgcgatc 5460
cagggatgga tcgccattgg tcatgcttcc ggatcggccg ggagcacgcc caatggaacc 5520
aacgcttcac cttgcctgcc gcttggtagt aaagtggcct tgaagttcga cgacactgtt 5580
catcgttctc aatagttcca aagattcctg gaggaacccc atggctcgta tcgcactcgt 5640
caccggcggc atcggcggca tcggcacttc gatctgcaca cgcctggcaa aggatggctg 5700
caccgtcgtg gcgaactgcc atccgtccga ggcggccgcc gccgaagagt ggaagcaggc 5760
ccgtgccgcc gaggggttcg acatcgccgt cttcaccgct gacgtgtcct cgttcgacga 5820
cagcgcgcgc atggttcgcg agatcacaga gcaggtcggt cccatcgaca tcctggtcaa 5880
ctgtgccggc atcacccgcg acaagacctt caagaagatg gagcaggcgc actgggaggc 5940
cgtgatcaac gtcaacctca acagcgtctt caacgtcacc cgtcaggtgt gggacgggat 6000
gctggagcgc ggcttcgggc gtatcatcaa catctcgtcg gtcaacggtc agcgcggcca 6060
gttcggtcag gccaactatt ccgccgccaa ggccggtatg cacggcttca ccatggctct 6120
ggctcaggag ggtgcgtcca agggcgtgac cgtcaacacc atctcgcccg gctatgtcga 6180
gacggccatg accctggcga tgaacgacga tgtgcgcaac agcatcatca gcggtattcc 6240
gatgcgtcgc atggctcagc ctaatgagat cgccgccgcc atcgctttcc tggccggcga 6300
cgagagcggt tatatgacgg gcgccaatct gccggtcaac ggcggtctgt tcatgcattg 6360
atttagatca taccgggccg aatacaaaac actgacaatg gcccggtgtt tcaggatctc 6420
accgagtcct cctcgtctct ctcatcatga gacgtttaca gcccggcgcc agccgggctt 6480
ttttttgtgt agaatcgaat cgcccatccg atgaacgctg tgatgaccga cgtacgcgat 6540
ctgatccgct actgcgatga cgtgctcgac gcggcgcgct tcgccgacta tgcgccgaat 6600
ggtttgcaag tggagggcga acggccgctc cagcggctgg tgtcgggcgt gacggccagc 6660
gccgcgttga tcgaggccgc gatcgcggag cacgccgacg ccattctggt ccatcatggc 6720
tggttctgga agaacgagaa tccctgcctg atcggcatca aggggcagcg cgcaaggaca 6780
ttgctcagcg cgggtgtgag tctgatcgcc tatcatctgc cgctcgatgc ccatcccgaa 6840
ctcggcaaca atgccacact cggtcgccgg ctcgatttca tcgacatgga accgaccgca 6900
ctggccaatg gtctgctgtg ggcggcgatt ggctcagccc atgacgcctg cgtccttcac 6960
ggagcatgtc tcgcatc 6977
//
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