Group Accession SAMEG119988

Name: 
Submission Title:GSE42146: RECURRENT MUTATIONS IN ATYPICAL CHRONIC MYELOID LEUKEMIA
Submission Identifier:GEN-SRP017138
Submission Description:Summary: RNA-Seq analysis of atypical chronic myeloid leukemia samples Overall Design: We sequenced leukemic mRNA from 13 Atypical Cronic Mieloid Leukemia (aCML) samples by Illumina GAIIx. Transcriptomic profiles, differentially expressed genes and pathway enrichment analysis were obtained comparing 7 SETBP1-mutated samples and 6 non-mutated (WT) samples by using TopHat aligner and SAMMate gene expression quantifier. We focused on the gene expression profile of known coding transcripts. A dataset of 20,907 protein-coding Ensembl Genes was obtained from the RNA-Seq by using the Human Ensembl GTF annotation file vs54 dowloaded from ftp://ftp.ensembl.org/pub/release-54/gtf/homo_sapiens/.
Submission Release Date:2013-10-07
Submission Update Date:2014-03-02
Submission Reference Layer:false
Databases:ENA SRA Link

URI: http://www.ebi.ac.uk/ena/data/view/SRP017138 ;

ID: SRP017138 ;

Organizations:
Name: GEO; Address: ; Role: Submitter; Email: ; URI:
Group Name : Other Group
Samples in group:13
References:
Common attributes:
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