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SBML and SBGN-ML models of atherosclerosis and atheroma formation.

Related Publication
  • New models of atherosclerosis and multi-drug therapeutic interventions.
  • Bioinformatics , 11/ 2018
  • Ulster University Western Health and Social Care Trust
  • Motivation Atherosclerosis is amongst the leading causes of death globally. However, it is challenging to study in vivo or in vitro and no detailed, openly-available computational models exist. Clinical studies hint that pharmaceutical therapy may be possible. Here we develop the first detailed, computational model of atherosclerosis and use it to develop multi-drug therapeutic hypotheses. Results We assembled a network describing atheroma development from the literature. Maps and mathematical models were produced using the Systems Biology Graphical Notation (SBGN) and Systems Biology Markup Language (SBML), respectively. The model was constrained against clinical and laboratory data. We identified five drugs that together potentially reverse advanced atheroma formation. Availability and Implementation The map is available in the supplementary information in SBGN-ML format. The model is available in the supplementary material and from BioModels, a repository of SBML models, containing CellDesigner markup. Supplementary Information Available from Bioinformatics online.
Steven Watterson

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Model files

S2_Model.xml SBML model of atherosclerosis and atheroma formation 503.69 KB Preview | Download

Additional files

S1_Model.xml SBGN-ML model of atherosclerosis and atheroma formation 118.36 KB Preview | Download

  • Model originally submitted by : Steven Watterson
  • Submitted: 18-Jan-2019 16:11:27
  • Last Modified: 18-Jan-2019 16:11:27
  • Version: 3 public model Download this version
    • Submitted on: 18-Jan-2019 16:11:27
    • Submitted by: Steven Watterson
    • With comment: Model revised without commit message