Whole Genome Metabolism - Burkholderia xenovorans (strain LB400)

  public model
Short description
Whole Genome Metabolism of "Burkholderia xenovorans (strain LB400)"
This is a whole genome metabolism model of Burkholderia xenovorans (strain LB400).
This model has been automatically generated by the SuBliMinaL Toolbox and libAnnotationSBML using information coming from from KEGG (release 66, April 2013, accessed via the resource's web services interface) and, where relevant, augmented with metabolic pathway information extracted from MetaCyc (version 17.0, March 2013).
This model has been produced by the path2models project and is currently hosted on BioModels Database and identified by: BMID000000141567 .
Other models with the same genus include BMID000000001093 BMID000000001094 BMID000000001095 BMID000000001096 BMID000000001097 BMID000000001098 BMID000000001099 BMID000000001100 BMID000000001101 BMID000000001102 BMID000000001103 BMID000000001104 BMID000000001105 BMID000000001106 BMID000000001107 BMID000000001108 BMID000000001109 BMID000000032205 BMID000000032206 BMID000000032207 BMID000000032208 BMID000000032209 BMID000000032210 BMID000000032211 BMID000000032212 BMID000000032213 BMID000000032214 BMID000000032215 BMID000000032216 BMID000000032217 BMID000000032218 BMID000000032219 BMID000000032220 BMID000000032221 BMID000000032222 BMID000000032223 BMID000000032224 BMID000000032225 BMID000000032226 BMID000000032227 BMID000000032228 BMID000000032229 BMID000000032230 BMID000000032231 BMID000000032232 BMID000000032233 BMID000000032234 BMID000000032235 BMID000000032236 BMID000000032237 BMID000000032238 BMID000000032239 BMID000000032240 BMID000000032241 BMID000000032242 BMID000000032243 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To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.
Format
SBML (L2V4)
Related Publication
  • Path2Models: large-scale generation of computational models from biochemical pathway maps.
  • Büchel F, Rodriguez N, Swainston N, Wrzodek C, Wrzodek C, Czauderna T, Keller R, Mittag F, Schubert M, Glont M, Golebiewski M, van Iersel MP, Keating SM, Rall M, Wybrow M, Hermjakob H, Hucka M, Kell DB, Müller W, Mendes P, Zell A, Chaouiya C, Saez-Rodriguez J, Schreiber F, Laibe C, Dräger A, Nicolas Le Novère
  • BMC systems biology , 11/ 2013 , Volume 7 , pages: 116
  • Systems biology projects and omics technologies have led to a growing number of biochemical pathway models and reconstructions. However, the majority of these models are still created de novo, based on literature mining and the manual processing of pathway data.To increase the efficiency of model creation, the Path2Models project has automatically generated mathematical models from pathway representations using a suite of freely available software. Data sources include KEGG, BioCarta, MetaCyc and SABIO-RK. Depending on the source data, three types of models are provided: kinetic, logical and constraint-based. Models from over 2 600 organisms are encoded consistently in SBML, and are made freely available through BioModels Database at http://www.ebi.ac.uk/biomodels-main/path2models. Each model contains the list of participants, their interactions, the relevant mathematical constructs, and initial parameter values. Most models are also available as easy-to-understand graphical SBGN maps.To date, the project has resulted in more than 140 000 freely available models. Such a resource can tremendously accelerate the development of mathematical models by providing initial starting models for simulation and analysis, which can be subsequently curated and further parameterized.
Contributors
Path2Models project

Metadata information

is
BioModels Database BMID000000141567
isDescribedBy
PubMed 17030797
isDerivedFrom
KEGG Genome bxe

Curation status
Non-curated

Name Description Size Actions

Model files

BMID000000141567_url.xml Path2Models entry for E. coli 18.81 MB Preview | Download

Additional files

Burkholderia.zip All files for E. coli 162.96 MB Preview | Download

  • Model originally submitted by : Path2Models project
  • Submitted: 19-May-2012 17:35:47
  • Last Modified: 19-May-2012 17:35:47
Revisions
  • Version: 1 public model Download this version
    • Submitted on: 19-May-2012 17:35:47
    • Submitted by: Path2Models project
    • With comment: Import of 'Whole Genome Metabolism - Burkholderia xenovorans (strain LB400)'.
Legends
: Variable used inside SBML models


Species
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Reactions
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