Izhikevich2004_SpikingNeurons_Class2Excitable

View the 2011-03 Model of the Month entry for this model
  public model
Model Identifier
BIOMD0000000142
Short description

This a model from the article:
Which model to use for cortical spiking neurons?
Izhikevich EM. IEEE Trans Neural Netw.2004 Sep;15(5):1063-70. 15484883,
Abstract:
We discuss the biological plausibility and computational efficiency of some of the most useful models of spiking and bursting neurons. We compare their applicability to large-scale simulations of cortical neural networks.

The model is according to the paperWhich Model to Use for Cortical Spiking Neurons? Figure1(H) Class 2 excitable has been reproduced by MathSBML. The ODE and the parameters values are taken from the a paper Simple Model of Spiking NeuronsThe original format of the models are encoded in the MATLAB format existed in the ModelDB with Accession number 39948

Figure1 are the simulation results of the same model with different choices of parameters and different stimulus function or events.a=0.2; b=0.26; c=-65; d=0; V=-64; u=b*V;

This model originates from BioModels Database: A Database of Annotated Published Models. It is copyright (c) 2005-2010 The BioModels Team.
For more information see the terms of use.
To cite BioModels Database, please use Le Novère N., Bornstein B., Broicher A., Courtot M., Donizelli M., Dharuri H., Li L., Sauro H., Schilstra M., Shapiro B., Snoep J.L., Hucka M. (2006) BioModels Database: A Free, Centralized Database of Curated, Published, Quantitative Kinetic Models of Biochemical and Cellular Systems Nucleic Acids Res., 34: D689-D691.

Format
SBML (L2V4)
Related Publication
  • Which model to use for cortical spiking neurons?
  • Izhikevich EM
  • IEEE transactions on neural networks , 9/ 2004 , Volume 15 , pages: 1063-1070 , PubMed ID: 15484883
  • The Neurosciences Institute, San Diego, CA 92121, USA. Eugene.Izhikevich@nsi.edu
  • We discuss the biological plausibility and computational efficiency of some of the most useful models of spiking and bursting neurons. We compare their applicability to large-scale simulations of cortical neural networks.
Contributors
Enuo He

Metadata information

is
BioModels Database MODEL7211373042
BioModels Database BIOMD0000000142
isDescribedBy
PubMed 15484883
hasTaxon
Taxonomy Mammalia
isVersionOf

Curation status
Curated

Original model(s)
http://senselab.med.yale.edu/modeldb/ShowModel.asp?model=39948&file=izhizh.m

Tags
Name Description Size Actions

Model files

BIOMD0000000142_url.xml SBML L2V4 representation of Izhikevich2004_SpikingNeurons_Class2Excitable 9.00 KB Preview | Download

Additional files

BIOMD0000000142.m Auto-generated Octave file 3.04 KB Preview | Download
BIOMD0000000142.sci Auto-generated Scilab file 67.00 bytes Preview | Download
BIOMD0000000142.svg Auto-generated Reaction graph (SVG) 851.00 bytes Preview | Download
BIOMD0000000142-biopax2.owl Auto-generated BioPAX (Level 2) 3.56 KB Preview | Download
BIOMD0000000142.vcml Auto-generated VCML file 900.00 bytes Preview | Download
BIOMD0000000142.pdf Auto-generated PDF file 133.04 KB Preview | Download
BIOMD0000000142_urn.xml Auto-generated SBML file with URNs 8.41 KB Preview | Download
BIOMD0000000142-biopax3.owl Auto-generated BioPAX (Level 3) 3.65 KB Preview | Download
BIOMD0000000142.xpp Auto-generated XPP file 1.48 KB Preview | Download
BIOMD0000000142.png Auto-generated Reaction graph (PNG) 5.04 KB Preview | Download

  • Model originally submitted by : Enuo He
  • Submitted: Aug 15, 2007 10:32:44 PM
  • Last Modified: Feb 25, 2015 11:19:33 AM
Revisions
  • Version: 2 public model Download this version
    • Submitted on: Feb 25, 2015 11:19:33 AM
    • Submitted by: Enuo He
    • With comment: Current version of Izhikevich2004_SpikingNeurons_Class2Excitable
  • Version: 1 public model Download this version
    • Submitted on: Aug 15, 2007 10:32:44 PM
    • Submitted by: Enuo He
    • With comment: Original import of Izhikevich2004_SpikingNeurons_Class2Excitable
Legends
: Variable used inside SBML models


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Curator's comment:
(added: 18 Jun 2010, 11:52:58, updated: 18 Jun 2010, 11:52:58)
Figure1H - class 2 excitable has been reproduced using Copasi v-4.5.31