This is model is according to the paperToward a detailed computational model for the mammalian circadian clock
In this model interlocked negative and positive regulation of Per,Cry,Bmal,REV-ERBalpha genes are all involved.The model is actually robust so the initial conditions are unimportant.We gave every entity zero as initial value,and start the graph at time=132h.
The simulation results in figure 8B can be reproduced by roadRunner online and Copasi. We use a ceiling function to simulate the day-light cycle.
This model originates from BioModels Database: A Database of Annotated Published Models. It is copyright (c) 2005-2011 The BioModels.net Team.
To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.
- Toward a detailed computational model for the mammalian circadian clock.
- Leloup JC, Goldbeter A
- Proceedings of the National Academy of Sciences of the United States of America , 6/ 2003 , Volume 100 , pages: 7051-7056
- Unité de Chronobiologie Théorique, Faculté des Sciences, Université Libre de Bruxelles, Campus Plaine, C. P. 231, B-1050 Brussels, Belgium.
- We present a computational model for the mammalian circadian clock based on the intertwined positive and negative regulatory loops involving the Per, Cry, Bmal1, Clock, and Rev-Erb alpha genes. In agreement with experimental observations, the model can give rise to sustained circadian oscillations in continuous darkness, characterized by an antiphase relationship between Per/Cry/Rev-Erbalpha and Bmal1 mRNAs. Sustained oscillations correspond to the rhythms autonomously generated by suprachiasmatic nuclei. For other parameter values, damped oscillations can also be obtained in the model. These oscillations, which transform into sustained oscillations when coupled to a periodic signal, correspond to rhythms produced by peripheral tissues. When incorporating the light-induced expression of the Per gene, the model accounts for entrainment of the oscillations by light-dark cycles. Simulations show that the phase of the oscillations can then vary by several hours with relatively minor changes in parameter values. Such a lability of the phase could account for physiological disorders related to circadian rhythms in humans, such as advanced or delayed sleep phase syndrome, whereas the lack of entrainment by light-dark cycles can be related to the non-24h sleep-wake syndrome. The model uncovers the possible existence of multiple sources of oscillatory behavior. Thus, in conditions where the indirect negative autoregulation of Per and Cry expression is inoperative, the model indicates the possibility that sustained oscillations might still arise from the negative autoregulation of Bmal1 expression.
|BIOMD0000000083_url.xml||SBML L2V4 representation of Leloup2003_CircClock_LD_REV-ERBalpha||221.28 KB||Preview | Download|
|BIOMD0000000083.svg||Auto-generated Reaction graph (SVG)||104.29 KB||Preview | Download|
|BIOMD0000000083-biopax3.owl||Auto-generated BioPAX (Level 3)||88.58 KB||Preview | Download|
|BIOMD0000000083.vcml||Auto-generated VCML file||125.32 KB||Preview | Download|
|BIOMD0000000083_urn.xml||Auto-generated SBML file with URNs||98.26 KB||Preview | Download|
|BIOMD0000000083.png||Auto-generated Reaction graph (PNG)||228.53 KB||Preview | Download|
|BIOMD0000000083.xpp||Auto-generated XPP file||16.06 KB||Preview | Download|
|BIOMD0000000083-biopax2.owl||Auto-generated BioPAX (Level 2)||54.16 KB||Preview | Download|
|BIOMD0000000083.sci||Auto-generated Scilab file||163.00 bytes||Preview | Download|
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|BIOMD0000000083.m||Auto-generated Octave file||22.48 KB||Preview | Download|
- Model originally submitted by : Enuo He
- Submitted: Nov 28, 2006 6:31:09 PM
- Last Modified: Nov 2, 2018 9:38:01 AM
- Submitted on: Nov 2, 2018 9:38:01 AM
- Submitted by: Ashley Xavier
- With comment: Automatically added model identifier BIOMD0000000083
- Submitted on: Feb 25, 2015 1:04:16 PM
- Submitted by: Enuo He
- With comment: Current version of Leloup2003_CircClock_LD_REV-ERBalpha
- Submitted on: Nov 28, 2006 6:31:09 PM
- Submitted by: Enuo He
- With comment: Original import of Leloup2003_CircClock_LD_REV-ERBalpha
(added: 21 Apr 2011, 03:44:49, updated: 21 Apr 2011, 03:44:49)