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27th BioModels Database Release

Hinxton, Friday 11th April 2014

We are proud to announce the 27th release of BioModels Database, in which we reached a new landmark of over 500 curated models!


500 curated models mark

BioModels Database now publicly provides access to 144,253 models. This corresponds to 1,183 models published in the literature and 143,070 models automatically generated from pathway resources.

Within the complete set of models supplied, over 500 models have been manually curated. Those models are fully MIRIAM compliant. This means that they have been thoroughly checked and annotated, and when instantiated in a simulation, they reproduce the results described in their reference paper. So congratulations to all the curators having been part of the team over the years!

Path2Models

The Path2Models branch of the repository, and more specially the non-metabolic sub-branch, now hosts models which were automatically generated from the Pathway Interaction Database.

We would be grateful if you could cite the relevant publications (Büchel, et al. 2013 and Büchel, et al. 2012) if you are using any model from the Path2Models branch.

New logo

Finally, BioModels Database now has a new logo:

BioModels Database logo

Feel free to use it in your websites, presentations and posters (a large version is also available). We hope you like it!

Download

All the models of this release are provided in the following archives from our FTP server:

Content summary

Classification of the curated models based on their Gene Ontology annotation:

TODO: Classification of curated models based on GO (r27)

Statistics

Models published in the literature

ReleasesModelsSpeciesRelationsCross-references
11 April 201411835609025550241724801
04 November 201310854013523410111117506
18 June 2013963156665174986171432
12 December 2012923145746165473134852
11 August 2012867133559154456108345
20 May 2012854133263154145107074
Expand/collapse statistics for all releases.

Path2Models

Path2Models is a branch of BioModels Database dedicated to hosting models automatically generated from pathway resources, such as KEGG, BioCarta, MetaCyc, PID and SABIO-RK.

 MetabolicNon-metabolicWhole genome metabolismTotal
Models 112,898 27,531 2,641 143,070
Species 16,306,840 872,501 8,937,630 26,087,614
Relations 2,795,659 208,146 6,495,608 9,484,348
Annotations 168,908,203 6,665,757 21,444,254 196,869,504

Acknowledgements

We would like to thank all our collaborators, founders and submitters. We also want to thank the SBML community for their support and the tools they develop and provide.

BioModels Database is the result of numerous current and past collaborations and has received funding from multiple sources. Please refer to our acknowledgements page for up-to-date details.


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