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BIOMD0000000363 - Lee2010_ThrombinActivation_OneForm_minimal

 

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Reference Publication
Publication ID: 20435402
Lee CJ, Wu S, Eun C, Pedersen LG.
A revisit to the one form kinetic model of prothrombinase.
Biophys. Chem. 2010 Jun; 149(1-2): 28-33
Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599-3290, USA.  [more]
Model
Original Model: BIOMD0000000363.origin
Submitter: Michael Schubert
Submission ID: MODEL1108260004
Submission Date: 26 Aug 2011 16:14:09 UTC
Last Modification Date: 09 Oct 2014 17:10:09 UTC
Creation Date: 26 Aug 2011 16:37:18 UTC
Encoders:  Michael Schubert
set #1
bqmodel:isDerivedFrom PubMed 17726029
set #2
bqbiol:hasTaxon Taxonomy Eukaryota
set #3
bqbiol:isVersionOf Gene Ontology blood coagulation
Notes
Model
Publication ID: 20435402 Submission Date: 26 Aug 2011 16:14:09 UTC Last Modification Date: 09 Oct 2014 17:10:09 UTC Creation Date: 26 Aug 2011 16:37:18 UTC
Mathematical expressions
Reactions
r1 r2 r3 r4
Physical entities
Compartments Species
compartment II M IIa
P2    
Reactions (4)
 
 r1 [II] → [M];  
 
 r2 [M] → [IIa];  
 
 r3 [II] → [P2];  
 
 r4 [P2] → [IIa];  
 
   compartment Spatial dimensions: 3.0  Compartment size: 1.0
 
 II
Compartment: compartment
Initial concentration: 1.0
 
   M
Compartment: compartment
Initial concentration: 0.0
 
 IIa
Compartment: compartment
Initial concentration: 0.0
 
   P2
Compartment: compartment
Initial concentration: 0.0
 
r1 (1)
 
 k1
Value: 0.005
Constant
 
r2 (1)
 
 k1
Value: 0.01
Constant
 
r3 (1)
 
 k1
Value: 1.0E-5
Constant
 
r4 (1)
 
 k1
Value: 2.5E-5
Constant
 
Representative curation result(s)
Representative curation result(s) of BIOMD0000000363

Curator's comment: (updated: 26 Aug 2011 17:31:44 BST)

Reproduction of figure S9 of the supplementary material.

Model integrated using PySCeS and plotted with Matplotlib.

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