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BIOMD0000000040 - Field1974_Oregonator

 

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Reference Publication
Publication ID: 10.1063/1.1681288...
Richard J. Field, Richard M. Noyes
Oscillations in chemical systems. IV. Limit cycle behavior in a model of a real chemical reaction
J. Chem. Phys. 1974; 60(5): 1877-1884
Department of Chemistry, University of Oregon, Eugene, Oregon 97403  [more]
Model
Original Model: BIOMD0000000040.origin
Submitter: Nicolas Le Novère
Submission ID: MODEL6622000424
Submission Date: 13 Sep 2005 14:35:08 UTC
Last Modification Date: 04 Apr 2014 17:35:57 UTC
Creation Date: 28 Jun 2005 13:58:38 UTC
Encoders:  Nicolas Le Novère
   Bruce Shapiro
set #1
bqbiol:isVersionOf Gene Ontology rhythmic behavior
bqbiol:hasTaxon Taxonomy cellular organisms
Notes

Field-Noyes Model of BZ Reaction

Citation
R.J.Field and R.M.Noyes,J.Chem.Phys.60,1877 (1974)
Description
Field Noyes Version of Belousov-Zhabotinsky Reaction. BrO3 is held constant; HOBr is typically ignored, and can be replaced by an empty-set. The stoichiometry f is typically taken as 1/2 or 1. .

Initially Generated by Cellerator Version 1.0 update 2.1220 using Mathematica 4.2 for Mac OS X (June 4, 2002), December 26, 2002 10:43:53, using (PowerMac,PowerPC, Mac OS X,MacOSX,Darwin). author=B.E.Shapiro

Modified with SBMLeditor by Nicolas Le Novère, to fit the original article.


To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.

In summary, you are entitled to use this encoded model in absolutely any manner you deem suitable, verbatim, or with modification, alone or embedded it in a larger context, redistribute it, commercially or not, in a restricted way or not.


To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.

Model
Publication ID: 10.1063/1.1681288... Submission Date: 13 Sep 2005 14:35:08 UTC Last Modification Date: 04 Apr 2014 17:35:57 UTC Creation Date: 28 Jun 2005 13:58:38 UTC
Mathematical expressions
Reactions
M1 M2 M3 M4
M5      
Physical entities
Compartments Species
BZ Br- BrO3- Ce4+
HBrO2 HOBr  
Global parameters
f      
Reactions (5)
 
 M1 [Br-] + [BrO3-] → [HBrO2] + [HOBr];  
 
 M2 [Br-] + [HBrO2] → 2.0 × [HOBr];  
 
 M3 [BrO3-] + [HBrO2] → [Ce4+] + 2.0 × [HBrO2];  
 
 M4 2.0 × [HBrO2] → [BrO3-] + [HOBr];  
 
 M5 [Ce4+] → [Br-];  
 
   Spatial dimensions: 3.0  Compartment size: 1.0
 
 Br-
Compartment: BZ
Initial concentration: 1.0E-7
 
 BrO3-
Compartment: BZ
Initial concentration: 0.06
Constant
 
   Ce4+
Compartment: BZ
Initial concentration: 0.05
 
   HBrO2
Compartment: BZ
Initial concentration: 5.0E-11
 
   HOBr
Compartment: BZ
Initial concentration: 0.0
Constant
 
Global Parameters (1)
 
   f
Value: 1.0
Constant
 
M1 (1)
 
   kM1
Value: 1.34
Constant
 
M2 (1)
 
   kM2
Value: 1.6E9
Constant
 
M3 (1)
 
   kM3
Value: 8000.0
Constant
 
M4 (1)
 
   kM4
Value: 4.0E7
Constant
 
M5 (1)
 
   kM5
Value: 1.0
Constant
 
Representative curation result(s)
Representative curation result(s) of BIOMD0000000040

Curator's comment: (updated: 04 Jan 2007 16:50:24 GMT)

Figure 3 "reproduced" with SBMLodeSolver.

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