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BIOMD0000000038 - Rohwer2000_Phosphotransferase_System

 

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Reference Publication
Publication ID: 10889194
Rohwer JM, Meadow ND, Roseman S, Westerhoff HV, Postma PW.
Understanding glucose transport by the bacterial phosphoenolpyruvate:glycose phosphotransferase system on the basis of kinetic measurements in vitro.
J. Biol. Chem. 2000 Nov; 275(45): 34909-34921
Department of Biochemistry, University of Stellenbosch, Private Bag X1, 7602 Matieland, South Africa. jrmaties.sun.ac.za  [more]
Model
Original Model: JWS logo
Submitter: Harish Dharuri
Submission ID: MODEL6621395815
Submission Date: 13 Sep 2005 14:23:44 UTC
Last Modification Date: 13 Apr 2015 10:26:22 UTC
Creation Date: 28 Jul 2005 09:39:17 UTC
Encoders:  Harish Dharuri
   Jacky L Snoep
set #1
bqbiol:hasProperty Mathematical Modelling Ontology MAMO_0000046
set #2
bqbiol:isVersionOf Gene Ontology regulation of glucose transport
Gene Ontology phosphoenolpyruvate-dependent sugar phosphotransferase system
set #3
bqbiol:hasTaxon Taxonomy Escherichia coli
set #4
bqbiol:is KEGG Pathway Phosphotransferase system (PTS) - Escherichia coli K-12 MG1655
Notes

SBML level 2 code generated for the JWS Online project by Jacky Snoep using PySCeS
Run this model online at http://jjj.biochem.sun.ac.za
To cite JWS Online please refer to: Olivier, B.G. and Snoep, J.L. (2004) Web-based modelling using JWS Online, Bioinformatics, 20:2143-2144

Model
Publication ID: 10889194 Submission Date: 13 Sep 2005 14:23:44 UTC Last Modification Date: 13 Apr 2015 10:26:22 UTC Creation Date: 28 Jul 2005 09:39:17 UTC
Mathematical expressions
Reactions
v1 v2 v3 v4
v5 v6 v7 v8
v9 v10    
Physical entities
Compartments Species
cell EI PyrPI EIP
HPr EIPHPr HPrP
EIIA HPrPIIA EIIAP
EIICB EIIAPIICB EIICBP
EIICBPGlc PEP Pyr
GlcP Glc  
Reactions (10)
 
 v1 [PEP] + [EI] ↔ [PyrPI];  
 
 v2 [PyrPI] ↔ [EIP] + [Pyr];  
 
 v3 [HPr] + [EIP] ↔ [EIPHPr];  
 
 v4 [EIPHPr] ↔ [HPrP] + [EI];  
 
 v5 [HPrP] + [EIIA] ↔ [HPrPIIA];  
 
 v6 [HPrPIIA] ↔ [EIIAP] + [HPr];  
 
 v7 [EIICB] + [EIIAP] ↔ [EIIAPIICB];  
 
 v8 [EIIAPIICB] ↔ [EIICBP] + [EIIA];  
 
 v9 [EIICBP] + [Glc] ↔ [EIICBPGlc];  
 
 v10 [EIICBPGlc] ↔ [EIICB] + [GlcP];  
 
 cell Spatial dimensions: 3.0  Compartment size: 1.0
 
 EI
Compartment: cell
Initial concentration: 3.0
 
 PyrPI
Compartment: cell
Initial concentration: 0.0
 
 EIP
Compartment: cell
Initial concentration: 2.0
 
 HPr
Compartment: cell
Initial concentration: 25.0
 
 EIPHPr
Compartment: cell
Initial concentration: 0.0
 
 HPrP
Compartment: cell
Initial concentration: 25.0
 
 EIIA
Compartment: cell
Initial concentration: 20.0
 
 HPrPIIA
Compartment: cell
Initial concentration: 0.0
 
 EIIAP
Compartment: cell
Initial concentration: 20.0
 
 EIICB
Compartment: cell
Initial concentration: 5.0
 
 EIIAPIICB
Compartment: cell
Initial concentration: 0.0
 
 EIICBP
Compartment: cell
Initial concentration: 5.0
 
 EIICBPGlc
Compartment: cell
Initial concentration: 0.0
 
 PEP
Compartment: cell
Initial concentration: 2800.0
 
 Pyr
Compartment: cell
Initial concentration: 900.0
 
 GlcP
Compartment: cell
Initial concentration: 50.0
 
 Glc
Compartment: cell
Initial concentration: 500.0
 
v1 (2)
 
   k1f
Value: 1960.0
Constant
 
   k1r
Value: 480000.0
Constant
 
v2 (2)
 
   k2f
Value: 108000.0
Constant
 
   k2r
Value: 294.0
Constant
 
v3 (2)
 
   k3f
Value: 14000.0
Constant
 
   k3r
Value: 14000.0
Constant
 
v4 (2)
 
   k4f
Value: 84000.0
Constant
 
   k4r
Value: 3360.0
Constant
 
v5 (2)
 
   k5f
Value: 21960.0
Constant
 
   k5r
Value: 21960.0
Constant
 
v6 (2)
 
   k6f
Value: 4392.0
Constant
 
   k6r
Value: 3384.0
Constant
 
v7 (2)
 
   k7f
Value: 880.0
Constant
 
   k7r
Value: 880.0
Constant
 
v8 (2)
 
   k8f
Value: 2640.0
Constant
 
   k8r
Value: 960.0
Constant
 
v9 (2)
 
   k9f
Value: 260.0
Constant
 
   k9r
Value: 389.0
Constant
 
v10 (2)
 
   k10f
Value: 4800.0
Constant
 
   k10r
Value: 0.0054
Constant
 
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