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BIOMD0000000024 - Scheper1999_CircClock

 

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Reference Publication
Publication ID: 9870936
Scheper T, Klinkenberg D, Pennartz C, van Pelt J.
A mathematical model for the intracellular circadian rhythm generator.
J. Neurosci. 1999 Jan; 19(1): 40-47
Oxford Brookes University, School for Computing and Math Science, Gipsy Lane Campus, OX3 0BP Headington Oxford, United Kingdom.  [more]
Model
Original Model: BIOMD0000000024.origin
Submitter: Nicolas Le Novère
Submission ID: MODEL6618241436
Submission Date: 13 Sep 2005 13:31:01 UTC
Last Modification Date: 25 Feb 2015 13:35:10 UTC
Creation Date: 24 Jun 2005 12:13:24 UTC
Encoders:  Nicolas Le Novère
set #1
bqbiol:isVersionOf Gene Ontology regulation of circadian rhythm
bqbiol:is KEGG Pathway dme04710
bqbiol:hasTaxon Taxonomy Drosophila melanogaster
Taxonomy Mesocricetus auratus
Notes

To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.

In summary, you are entitled to use this encoded model in absolutely any manner you deem suitable, verbatim, or with modification, alone or embedded it in a larger context, redistribute it, commercially or not, in a restricted way or not.

To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.

Model
Publication ID: 9870936 Submission Date: 13 Sep 2005 13:31:01 UTC Last Modification Date: 25 Feb 2015 13:35:10 UTC Creation Date: 24 Jun 2005 12:13:24 UTC
Mathematical expressions
Reactions
mRNA production protein production messenger degradation protein degradation
Physical entities
Compartments Species
cytoplasm EmptySet mRNA protein
Reactions (4)
 
 mRNA production [EmptySet] → [mRNA];   {protein}
 
 protein production [EmptySet] → [protein];   {mRNA}
 
 messenger degradation [mRNA] → [EmptySet];  
 
 protein degradation [protein] → [EmptySet];  
 
 cytoplasm Spatial dimensions: 3.0  Compartment size: 1.0E-15
 
   EmptySet
Compartment: cytoplasm
Initial amount: 0.0
Constant
 
 mRNA
Compartment: cytoplasm
Initial amount: 1.0E-15
 
 protein
Compartment: cytoplasm
Initial amount: 1.0E-15
 
mRNA production (3)
 
   rM
Value: 1.0
Constant
 
   k
Value: 1.0
Constant
 
   n
Value: 2.0
Constant
 
protein production (3)
 
   rP
Value: 1.0
Constant
 
   m
Value: 3.0
Constant
 
   tau
Value: 4.0
Constant
 
messenger degradation (1)
 
   qM
Value: 0.21
Constant
 
protein degradation (1)
 
   qP
Value: 0.21
Constant
 
Representative curation result(s)
Representative curation result(s) of BIOMD0000000024

Curator's comment: (updated: 19 Oct 2006 22:37:25 BST)

Figure 2 bottom reproduced by xppaut 5.85

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